Search result

BaseInfo

ncRNA ID	ath-miRf10474-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - UACUCGACCUGGGGUUCGAGU - NA
Stem-loop(if miRNA)	U  AGA      GC   G         GAUGG    AG  ----------------  G    GG    G GAUGAAGACACUCGACCUCGGGGUCGAGUGAUGUGAUCGAGUGAUGGUCAGGUGAUGGGAUGAAGACA AGG GA   CACUCG  CUC GGGUCGAGU     AUCG  UG                AU GUCA  UGAU G                                                                    C ||| ||   ||||||  ||| |||||||||     ||||  ||                || ||||  |||| | UUC CU   GUGAGC  GGG UCCAGCUCA     CUUC  UG                UU GUGA  GCUG G                                                                    U    U  --G      UU   G         ----U    --  UAGUGUUGAAGUGGAG  -    --    - UGCUUCAGCUCGCAGAAGUAGAGGUAGUGGACUGGUAGUGAGCUAGUGUAGUGAGCUGGGGCUCCAGC
Stem-loop sequence	AGGUGAAGACACUCGGCCUCGGGGUCGAGUGAUGGAUCGAGUGAUGGUCAGGUGAUGGGAUGAAGACACUCGACCUCGGGGUCGAGUGAUGUGAUCGAGUGAUGGUCAGGUGAUGGGAUGAAGACACUCGACCUCGGGGUCGAGUGAUGUGAUCGAGUGAUGGUCAGGUGAUGGAGAUGAAGACGCUCGACUUCGUGGUCGAGUGUUGAGGUGAAGUUGUGAUGUCUUCUACUCGACCUGGGGUUCGAGUGGUCUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT025674.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*|||||||||||||| targets:189   ACUCGACCCCCAGGUCGAGUA   209 Target Full Sequence	1.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*|||||||||||||| targets:1106   ACUCGACCCCCAGGUCGAGUA   1126 Target Full Sequence	1.0	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT014714.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*|||||||||||||= targets:138   ACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*|||||||||||||= targets:138   ACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*||||*||||||||| targets:310   ACUCGACCCCCUGGUCGAGUA   330 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*||||*||||||||| targets:183   ACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*||||*||||||||| targets:232   ACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*||||*||||||||| targets:183   ACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*||||*||||||||| targets:232   ACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*||||*||||||||| targets:92   ACUCGACCCCCUGGUCGAGUA   112 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*|*|||||||||||| targets:451   ACUCGACCACCAGGUCGAGUA   471 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*||||*||||||||| targets:126   ACUCGACCCCCUGGUCGAGUA   146 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*||||*||||||||| targets:501   ACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*||||*||||||||| targets:501   ACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:21   UGAGCUUGGGGUCCAGCUCAU   1   ||||||*||||*||||||||| targets:1573   ACUCGACCCCCUGGUCGAGUA   1593 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget