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BaseInfo

ncRNA ID	novel_ath_miR378
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr2:4285124-4285205 [+]
Reference genome	TAIR10
Source	SRR2135660
Length	24
Mature sequence(if miRNA)	59 - GGAGAAGACUCUGAAGCUGGCAGU - 82
Stem-loop(if miRNA)	--  AUA    --            UCUUG  U UG     G G   UG   AGCU  GGAGUCUUCUUC     CU G  CUCGA U U   ||   ||||  ||||||||||||     || |  ||||| |   AC   UCGA  UCUCAGAAGAGG     GG C  GAGUU G C UG  -GG    AG            --UAA  - GU     G U
Stem-loop sequence	UGAUAAGCUGGAGUCUUCUUCUCUUGCUUGUGCUCGAGUGUCUGGUUGAGUGCGGAAUGGAGAAGACUCUGAAGCUGGCAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:24   UGACGGUCGAAGUCUCAGAAGAGG   1   ||*||||||||||||||||||||| targets:394   ACCGCCAGCUUCAGAGUCUUCUCC   417 Target Full Sequence	0.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:24   UGACGGUCGAAGUCUCAGAAGAGG   1   |||||||||*|||||||||||||| targets:739   ACUGCCAGCYUCAGAGUCUUCUCC   762 Target Full Sequence	1.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
EF183192.1	ncRNA:24   UGACGGUCGAAGUCUCAGAAGAGG   1   |||||=|||||||||||||||||| targets:759   ACUGCUAGCUUCAGAGUCUUCUCC   782 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:24   UGACGGUCGAAGUCUCAGAAGAGG   1   |||||=|||||||||||||||||| targets:1086   ACUGCUAGCUUCAGAGUCUUCUCC   1109 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:24   UGACGGUCGAAGUCUCAGAAGAGG   1   |||||=|||||||||||||||||| targets:1134   ACUGCUAGCUUCAGAGUCUUCUCC   1157 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
AY084487.1	ncRNA:24   UGAC--------GGUCGAAGUCUCAGAAGAGG   1   ||||--------=|||||||*||||||||||| targets:1   ACUGGGUCUUCUUCAGCUUCUGAGUCUUCUCC   32 Target Full Sequence	1.5	Arabidopsis thaliana clone 109398 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_111963.3	ncRNA:24   UGAC--------GGUCGAAGUCUCAGAAGAGG   1   ||||--------=|||||||*||||||||||| targets:186   ACUGGGUCUUCUUCAGCUUCUGAGUCUUCUCC   217 Target Full Sequence	1.5	Arabidopsis thaliana Duplicated homeodomain-like superfamily protein mRNA	Duplicated homeodomain-like superfamily protein(AT3G11280)	coding protein	psRNATarget
NM_180227.4	ncRNA:24   UGAC--------GGUCGAAGUCUCAGAAGAGG   1   ||||--------=|||||||*||||||||||| targets:150   ACUGGGUCUUCUUCAGCUUCUGAGUCUUCUCC   181 Target Full Sequence	1.5	Arabidopsis thaliana Duplicated homeodomain-like superfamily protein mRNA	Duplicated homeodomain-like superfamily protein(AT3G11280)	coding protein	psRNATarget
BX824225.1	ncRNA:21   CGGUCGAAGUCUCAGAAGAGG   1   *=|||||||*||||||||||| targets:1   UUCAGCUUCUGAGUCUUCUCC   21 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH30ZH04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget