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BaseInfo

ncRNA ID novel_ath_miR375
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:9852685-9852768 [+]
Reference genome TAIR10
Source SRR2135660;SRR2135661;ERR1337946;ERR1337968;SRR1312896
Length 21
Mature sequence(if miRNA) 1 - UGGAGAAGCAGGGCACGUGCG - 21
Stem-loop(if miRNA) --     A  C              ---CA AAAUGAAAUCGA
  UGGAG AG AGGGCACGUGCGAA     C            U
  ||||| || ||||||||||||||     |            C
  ACCUC UC UCUUGUGCACGCUU     C            G
CA     A  A              UUAUA UAGUUGUUCAUG
Stem-loop sequence UGGAGAAGCAGGGCACGUGCGAACACAAAUGAAAUCGAUCGGUACUUGUUGAUCAUAUUUUCGCACGUGUUCUACUACUCCAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BX832490.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  =*=||||||||||||||||||
targets:808   UUUACGUGCCCUGCUUCUCCA   828

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH76ZF08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT006419.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  =*=||||||||||||||||||
targets:626   UUUACGUGCCCUGCUUCUCCA   646

1.0 Arabidopsis thaliana At5g07680 gene, complete cds NA coding protein psRNATarget
NM_180458.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  =*=||||||||||||||||||
targets:651   UUUACGUGCCCUGCUUCUCCA   671

1.0 Arabidopsis thaliana NAC domain containing protein 80 (NAC080), mRNA NAC domain containing protein 80(NAC080) coding protein psRNATarget
AY087700.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  =*=||||||||||||||||||
targets:651   UUUACGUGCCCUGCUUCUCCA   671

1.0 Arabidopsis thaliana clone 37792 mRNA, complete sequence NA coding protein psRNATarget
AK228027.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  =*=||||||||||||||||||
targets:843   UUUACGUGCCCUGCUUCUCCA   863

1.0 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-54-D06 NA coding protein psRNATarget
BX832226.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  =*=||||||||||||||||||
targets:873   UUUACGUGCCCUGCUUCUCCA   893

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH5ZF02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_120850.4
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  =*=||||||||||||||||||
targets:923   UUUACGUGCCCUGCUUCUCCA   943

1.0 Arabidopsis thaliana NAC domain containing protein 80 (NAC080), mRNA NAC domain containing protein 80(NAC080) coding protein psRNATarget
BT005873.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||||
targets:464   AGCACGUACCCUGCUUCUCCA   484

1.0 Arabidopsis thaliana At1g56010 gene, complete cds NA coding protein psRNATarget
AK228347.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||||
targets:777   AGCACGUACCCUGCUUCUCCA   797

1.0 Arabidopsis thaliana mRNA for NAC1, complete cds, clone: RAFL14-76-M12 NA coding protein psRNATarget
AF198054.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||||
targets:753   AGCACGUACCCUGCUUCUCCA   773

1.0 Arabidopsis thaliana NAC1 (NAC1) mRNA, complete cds NA coding protein psRNATarget
AY085996.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||||
targets:762   AGCACGUACCCUGCUUCUCCA   782

1.0 Arabidopsis thaliana clone 205648 mRNA, complete sequence NA coding protein psRNATarget
NM_104479.2
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||||
targets:802   AGCACGUACCCUGCUUCUCCA   822

1.0 Arabidopsis thaliana NAC domain containing protein 1 (NAC1), mRNA NAC domain containing protein 1(NAC1) coding protein psRNATarget
NM_179486.2
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||||
targets:1706   AGCACGUACCCUGCUUCUCCA   1726

1.0 Arabidopsis thaliana NAC domain containing protein 1 (NAC1), mRNA NAC domain containing protein 1(NAC1) coding protein psRNATarget
AJ276766.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *|||=||*|||||||||||||
targets:129   AGCAUGUACCCUGCUUCUCCA   149

2.0 Arabidopsis thaliana partial mRNA, clone DiDi 19C-1a NA coding protein psRNATarget
NM_001338015.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *|||=||*|||||||||||||
targets:728   AGCAUGUACCCUGCUUCUCCA   748

2.0 Arabidopsis thaliana NAC (No Apical Meristem) domain transcriptional regulator superfamily protein mRNA NAC (No Apical Meristem) domain transcriptional regulator superfamily protein(AT3G12977) coding protein psRNATarget
NM_001035606.4
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  *|||=||*|||||||||||||
targets:919   AGCAUGUACCCUGCUUCUCCA   939

2.0 Arabidopsis thaliana NAC (No Apical Meristem) domain transcriptional regulator superfamily protein mRNA NAC (No Apical Meristem) domain transcriptional regulator superfamily protein(AT3G12977) coding protein psRNATarget
BX830975.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:202   CUCACGUGACCUGCUUCUCCG   222

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS44ZG06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX830509.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:464   CUCACGUGACCUGCUUCUCCG   484

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB87ZG05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY174163.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:632   CUCACGUGACCUGCUUCUCCG   652

2.5 Arabidopsis thaliana ecotype Columbia no apical meristem-like protein mRNA, complete cds NA coding protein psRNATarget
AY091191.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:632   CUCACGUGACCUGCUUCUCCG   652

2.5 Arabidopsis thaliana putative NAM/CUC2 protein (At5g39610) mRNA, complete cds NA coding protein psRNATarget
AY084635.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:765   CUCACGUGACCUGCUUCUCCG   785

2.5 Arabidopsis thaliana clone 113779 mRNA, complete sequence NA coding protein psRNATarget
AY056327.1
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:755   CUCACGUGACCUGCUUCUCCG   775

2.5 Arabidopsis thaliana putative NAM / CUC2 protein (At5g39610) mRNA, complete cds NA coding protein psRNATarget
NM_123323.3
ncRNA:21   GCGUGCACGGGACGAAGAGGU   1
  |*||||||*|||||||||||=
targets:893   CUCACGUGACCUGCUUCUCCG   913

2.5 Arabidopsis thaliana NAC domain containing protein 6 (NAC6), mRNA NAC domain containing protein 6(NAC6) coding protein psRNATarget
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