Search result

BaseInfo

ncRNA ID novel_ath_miR368
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:17522370-17522503 [+]
Reference genome TAIR10
Source SRR2135660
Length 23
Mature sequence(if miRNA) 112 - AGUUGAGACAGUGGAUGGCUAUA - 134
Stem-loop(if miRNA) --UU     G -     AU      AAACA       UU     UCCCUUCUCA    -AA   U      G     
    GUCAU U UUGUC  UUAGCU     GAGAAAG  ACCCU          GAAU   AGU UGUAAU AAAUCU
    ||||| | |||||  ||||||     |||||||  |||||          ||||   ||| |||||| |||||U
    CGGUA G GACAG  AGUUGA     CUUUUUC  UGGGG          UUUA   UUA ACAUUG UUUAGU
AUAU     G U     --      -----       -C     ----------    CAG   C      -     
Stem-loop sequence UUGUCAUGUUUGUCAUUUAGCUAAACAGAGAAAGUUACCCUUCCCUUCUCAGAAUAAAGUUUGUAAUGAAAUCUUUGAUUUGUUACACAUUGACAUUUGGGGUCCUUUUUCAGUUGAGACAGUGGAUGGCUAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_119781.2
ncRNA:23   AUAUCGGUAGGUGACAGAGUUGA   1
  *|*||||||==||||||||||||
targets:1130   CAAAGCCAUUUACUGUCUCAACU   1152

2.5 Arabidopsis thaliana disease resistance protein (TIR-NBS-LRR class) mRNA disease resistance protein (TIR-NBS-LRR class)(AT4G36140) coding protein psRNATarget
NM_001342405.1
ncRNA:23   AUAUCGGUAGGUGACAGAGUUGA   1
  *|*||||||==||||||||||||
targets:1206   CAAAGCCAUUUACUGUCUCAACU   1228

2.5 Arabidopsis thaliana disease resistance protein (TIR-NBS-LRR class) mRNA disease resistance protein (TIR-NBS-LRR class)(AT4G36140) coding protein psRNATarget