ncRNA ID | novel_ath_miR368 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr1:17522370-17522503 [+] |
Reference genome | TAIR10 |
Source | SRR2135660 |
Length | 23 |
Mature sequence(if miRNA) | 112 - AGUUGAGACAGUGGAUGGCUAUA - 134 |
Stem-loop(if miRNA) |
--UU     G -     AU      AAACA       UU     UCCCUUCUCA    -AA   U      G          GUCAU U UUGUC  UUAGCU     GAGAAAG  ACCCU          GAAU   AGU UGUAAU AAAUCU     ||||| | |||||  ||||||     |||||||  |||||          ||||   ||| |||||| |||||U     CGGUA G GACAG  AGUUGA     CUUUUUC  UGGGG          UUUA   UUA ACAUUG UUUAGU AUAU     G U     --      -----       -C     ----------    CAG   C      -      |
Stem-loop sequence | UUGUCAUGUUUGUCAUUUAGCUAAACAGAGAAAGUUACCCUUCCCUUCUCAGAAUAAAGUUUGUAAUGAAAUCUUUGAUUUGUUACACAUUGACAUUUGGGGUCCUUUUUCAGUUGAGACAGUGGAUGGCUAUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_119781.2 |
|
2.5 | Arabidopsis thaliana disease resistance protein (TIR-NBS-LRR class) mRNA | disease resistance protein (TIR-NBS-LRR class)(AT4G36140) | coding protein | psRNATarget | |||||||||
NM_001342405.1 |
|
2.5 | Arabidopsis thaliana disease resistance protein (TIR-NBS-LRR class) mRNA | disease resistance protein (TIR-NBS-LRR class)(AT4G36140) | coding protein | psRNATarget |