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BaseInfo

ncRNA ID novel_ath_miR365
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:17216300-17216373 [+]
Reference genome TAIR10
Source SRR2135660
Length 24
Mature sequence(if miRNA) 1 - AUUUGUUGGAAUAUGAUCGUUGGA - 24
Stem-loop(if miRNA) --       G  A     U    ----GG        AU
  AUUUGUU GA UAUGA CGUU      AAAUUUGC  U
  ||||||| || ||||| ||||      ||||||||  U
  UAAAUGA CU AUAUU GCAA      UUUAAACG  G
AG       G  -     U    AGGUUA        CU
Stem-loop sequence AUUUGUUGGAAUAUGAUCGUUGGAAAUUUGCAUUUGUCGCAAAUUUAUUGGAAACGUUUAUAUCGAGUAAAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BX828888.1
ncRNA:24   AGGUUGCUAGUAUAAGGUUGUUUA   1
  ||=|||*|*|*|||||||||||||
targets:250   UCUAACCAGCUUAUUCCAACAAAU   273

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL47ZG06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_148233.1
ncRNA:24   AGGUUGCUAGUAUAAGGUUGUUUA   1
  ||=|||*|*|*|||||||||||||
targets:300   UCUAACCAGCUUAUUCCAACAAAU   323

3.0 Arabidopsis thaliana Eukaryotic aspartyl protease family protein partial mRNA Eukaryotic aspartyl protease family protein(AT4G04985) coding protein psRNATarget