ncRNA ID | novel_ath_miR360 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr1:30019414-30019578 [-] |
Reference genome | TAIR10 |
Source | SRR2135659;SRR2135660;SRR1262601 |
Length | 24 |
Mature sequence(if miRNA) | 142 - AUCCUUAUUGAUGAUCUCUUAACA - 165 |
Stem-loop(if miRNA) |
--   C         A C      C  UAC     -           U        -UCUAACAA     UAU         UUA   AUC UUAUUGAUG U UCUUAA AU   UCUUA GUUAAGAGAUA GUCUUAUA         AAUUG   UAAAGUCUC   U   ||| ||||||||| | |||||| ||   ||||| ||||||||||| ||||||||         |||||   |||||||||   UAG AAUAAUUAU A AGAAUU UG   AGAAU CAAUUCUCUGU CAGAAUAU         UUAAU   GUUUCAGAG   U CG   C         C A      U  UUA     U           -        UAUCGAAUA     --U         UAU |
Stem-loop sequence | AUCCUUAUUGAUGAUCUCUUAACAUUACUCUUAGUUAAGAGAUAUGUCUUAUAUCUAACAAAAUUGUAUUAAAGUCUCUUAUUUAUGAGACUUUGUUAAUUAUAAGCUAUUAUAAGACUGUCUCUUAACUUAAGAAUUGUUUUAAGAAACUAUUAAUAACGAUGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_100154.4 |
|
1.5 | Arabidopsis thaliana MRG family protein mRNA | MRG family protein(AT1G02740) | coding protein | psRNATarget | |||||||||
BT023414.1 |
|
1.5 | Arabidopsis thaliana At1g02740 gene, complete cds | NA | coding protein | psRNATarget |