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BaseInfo

ncRNA ID novel_ath_miR360
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:30019414-30019578 [-]
Reference genome TAIR10
Source SRR2135659;SRR2135660;SRR1262601
Length 24
Mature sequence(if miRNA) 142 - AUCCUUAUUGAUGAUCUCUUAACA - 165
Stem-loop(if miRNA) --   C         A C      C  UAC     -           U        -UCUAACAA     UAU         UUA
  AUC UUAUUGAUG U UCUUAA AU   UCUUA GUUAAGAGAUA GUCUUAUA         AAUUG   UAAAGUCUC   U
  ||| ||||||||| | |||||| ||   ||||| ||||||||||| ||||||||         |||||   |||||||||
  UAG AAUAAUUAU A AGAAUU UG   AGAAU CAAUUCUCUGU CAGAAUAU         UUAAU   GUUUCAGAG   U
CG   C         C A      U  UUA     U           -        UAUCGAAUA     --U         UAU
Stem-loop sequence AUCCUUAUUGAUGAUCUCUUAACAUUACUCUUAGUUAAGAGAUAUGUCUUAUAUCUAACAAAAUUGUAUUAAAGUCUCUUAUUUAUGAGACUUUGUUAAUUAUAAGCUAUUAUAAGACUGUCUCUUAACUUAAGAAUUGUUUUAAGAAACUAUUAAUAACGAUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_100154.4
ncRNA:24   ACAA--UUCUCUAGUAGUUAUUCCUA   1
  ||||--||||||||||||||||*|||
targets:1383   UGUUUUAAGAGAUCAUCAAUAAUGAU   1408

1.5 Arabidopsis thaliana MRG family protein mRNA MRG family protein(AT1G02740) coding protein psRNATarget
BT023414.1
ncRNA:24   ACAA--UUCUCUAGUAGUUAUUCCUA   1
  ||||--||||||||||||||||*|||
targets:1222   UGUUUUAAGAGAUCAUCAAUAAUGAU   1247

1.5 Arabidopsis thaliana At1g02740 gene, complete cds NA coding protein psRNATarget