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BaseInfo

ncRNA ID novel_ath_miR350
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:14578775-14578951 [-]
Reference genome TAIR10
Source SRR2135659
Length 23
Mature sequence(if miRNA) 1 - AAUAGGUUUCGGAGGAUGGGUUA - 23
Stem-loop(if miRNA) --     GAU      -U          G      -     UUUCUUUU  UUU   CU  U    UUCAUCCUAUUAU   -CUU  U  UA
  AUCCG   UUCUCU  AAUCUAUUCA UAUUCA GCAUU        GA   CGU  AC GUUG             CAU    GC AU  U
  |||||   ||||||  |||||||||| |||||| |||||        ||   |||  || ||||             |||    || ||
  UGGGU   AGGAGG  UUGGAUAAGU AUGAGU UGUAG        CU   GUA  UG UAAC             GUA    UG UG  U
AU     ---      CU          A      A     UAACAUCU  --U   UU  -    UUAUCUUACUUUU   CUAU  U  UU
Stem-loop sequence AUCCGGAUUUCUCUUAAUCUAUUCAGUAUUCAGCAUUUUUCUUUUGAUUUCGUCUACUGUUGUUCAUCCUAUUAUCAUCUUGCUAUUAUUUUGUUGUUAUCAUGUUUUCAUUCUAUUCAAUGUUUAUGUUCUCUACAAUGAUGUAUGAGUAAUGAAUAGGUUUCGGAGGAUGGGUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183005.1
ncRNA:23   AUUGGGUAGGAGGCUUUGGAUAA   1
  ||||||||||||*||||||||||
targets:1337   UAACCCAUCCUCAGAAACCUAUU   1359

1.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget