ncRNA ID | novel_ath_miR350 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr3:14578775-14578951 [-] |
Reference genome | TAIR10 |
Source | SRR2135659 |
Length | 23 |
Mature sequence(if miRNA) | 1 - AAUAGGUUUCGGAGGAUGGGUUA - 23 |
Stem-loop(if miRNA) |
--     GAU      -U          G      -     UUUCUUUU  UUU   CU  U    UUCAUCCUAUUAU   -CUU  U  UA   AUCCG   UUCUCU  AAUCUAUUCA UAUUCA GCAUU        GA   CGU  AC GUUG             CAU    GC AU  U   |||||   ||||||  |||||||||| |||||| |||||        ||   |||  || ||||             |||    || ||   UGGGU   AGGAGG  UUGGAUAAGU AUGAGU UGUAG        CU   GUA  UG UAAC             GUA    UG UG  U AU     ---      CU          A      A     UAACAUCU  --U   UU  -    UUAUCUUACUUUU   CUAU  U  UU |
Stem-loop sequence | AUCCGGAUUUCUCUUAAUCUAUUCAGUAUUCAGCAUUUUUCUUUUGAUUUCGUCUACUGUUGUUCAUCCUAUUAUCAUCUUGCUAUUAUUUUGUUGUUAUCAUGUUUUCAUUCUAUUCAAUGUUUAUGUUCUCUACAAUGAUGUAUGAGUAAUGAAUAGGUUUCGGAGGAUGGGUUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EF183005.1 |
|
1.5 | Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence | NA | coding protein | psRNATarget |