Search result

BaseInfo

ncRNA ID ath-miRf10470-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - CCACUCGACCCCCUGGUCGAGU - NA
Stem-loop(if miRNA) GACC        CCCU        --A    ACUUCA
    ACUCGACC    GGUCGAGU   GAGG      C
    ||||||||    ||||||||   ||||
    UGAGCUGG    CCAGCUCA   CUCC      C
-CUC        UCCC        CCA    ACUUCA
Stem-loop sequence GACCACUCGACCCCCUGGUCGAGUAGAGGACUUCACCACUUCACCUCACCACUCGACCCCCUGGUCGAGUCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183311.1
ncRNA:22   UGAGCUGGUCCCCCAGCUCACC   1
  ||||||||||||||||||||||
targets:437   ACUCGACCAGGGGGUCGAGUGG   458

0.0 Arabidopsis thaliana clone asmbl_5275 unknown mRNA sequence NA coding protein psRNATarget
EF183005.1
ncRNA:22   UGAGCUGGUCCCCCAGCUCACC   1
  |||||||||*||||||||||||
targets:1925   ACUCGACCACGGGGUCGAGUGG   1946

1.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
Y11156.1
ncRNA:22   UGAGCUGGUCCCCCAGCUCACC   1
  ***=||*||||||||||||||*
targets:134   UGAUGAACAGGGGGUCGAGUGU   155

3.0 A.thaliana mRNA for hypothetical protein, partial (2019 bp) NA coding protein psRNATarget
NM_001341078.1
ncRNA:22   UGAGCUGGUCCCCCAGCUCACC   1
  ***=||*||||||||||||||*
targets:2105   UGAUGAACAGGGGGUCGAGUGU   2126

3.0 Arabidopsis thaliana binding protein mRNA binding protein(AT4G15890) coding protein psRNATarget
NM_117681.3
ncRNA:22   UGAGCUGGUCCCCCAGCUCACC   1
  ***=||*||||||||||||||*
targets:2210   UGAUGAACAGGGGGUCGAGUGU   2231

3.0 Arabidopsis thaliana binding protein mRNA binding protein(AT4G15890) coding protein psRNATarget