ncRNA ID | novel_ath_miR334 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr4:17450186-17450377 [-] |
Reference genome | TAIR10 |
Source | SRR2135658 |
Length | 23 |
Mature sequence(if miRNA) | 170 - UUACAAGGGAUUUUAAAACGGUU - 192 |
Stem-loop(if miRNA) |
--                  CG      -             A          A       -     G      GA         GA     AAACA   UUACAAGGGAUUUUAAAA  GUUUUA AAGAUUUACAAGA AUUUUAAAAG GUUUUAA AAGAU UACAAG  UUUUUAAAA  UUUUU     A   ||||||||||||||||||  |||||| ||||||||||||| |||||||||| ||||||| ||||| ||||||  |||||||||  |||||     U   AAUGUUUCCUAAAAUUUU  CAAAAU UUCUAAAUGUUCU UAAAAUUUUC CAAAAUU UUUUA AUGUUC  AAAAAUUUU  AAAAG     U UA                  CA      G             C          -       A     A      UC         AC     AACAU |
Stem-loop sequence | UUACAAGGGAUUUUAAAACGGUUUUAAAGAUUUACAAGAAAUUUUAAAAGAGUUUUAAAAGAUGUACAAGGAUUUUUAAAAGAUUUUUAAACAAUUUACAAGAAAACAUUUUAAAAACUCUUGUAAAUUUUAUUAAAACCUUUUAAAAUCUCUUGUAAAUCUUGUAAAACACUUUUAAAAUCCUUUGUAAAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001085086.1 |
|
3.0 | Arabidopsis thaliana succinate dehydrogenase 3-1 (SDH3-1), mRNA | succinate dehydrogenase 3-1(SDH3-1) | coding protein | psRNATarget |