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BaseInfo

ncRNA ID novel_ath_miR334
Species Arabidopsis thaliana
Class miRNA
Genome position Chr4:17450186-17450377 [-]
Reference genome TAIR10
Source SRR2135658
Length 23
Mature sequence(if miRNA) 170 - UUACAAGGGAUUUUAAAACGGUU - 192
Stem-loop(if miRNA) --                  CG      -             A          A       -     G      GA         GA     AAACA
  UUACAAGGGAUUUUAAAA  GUUUUA AAGAUUUACAAGA AUUUUAAAAG GUUUUAA AAGAU UACAAG  UUUUUAAAA  UUUUU     A
  ||||||||||||||||||  |||||| ||||||||||||| |||||||||| ||||||| ||||| ||||||  |||||||||  |||||     U
  AAUGUUUCCUAAAAUUUU  CAAAAU UUCUAAAUGUUCU UAAAAUUUUC CAAAAUU UUUUA AUGUUC  AAAAAUUUU  AAAAG     U
UA                  CA      G             C          -       A     A      UC         AC     AACAU
Stem-loop sequence UUACAAGGGAUUUUAAAACGGUUUUAAAGAUUUACAAGAAAUUUUAAAAGAGUUUUAAAAGAUGUACAAGGAUUUUUAAAAGAUUUUUAAACAAUUUACAAGAAAACAUUUUAAAAACUCUUGUAAAUUUUAUUAAAACCUUUUAAAAUCUCUUGUAAAUCUUGUAAAACACUUUUAAAAUCCUUUGUAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001085086.1
ncRNA:23   UUGGCAAAAUUUUAGGGAACAUU   1
  **||||||**||||||||||||=
targets:136   UUCCGUUUACAAAUCCCUUGUAG   158

3.0 Arabidopsis thaliana succinate dehydrogenase 3-1 (SDH3-1), mRNA succinate dehydrogenase 3-1(SDH3-1) coding protein psRNATarget