Search result

BaseInfo

ncRNA ID novel_ath_miR329
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:11204829-11204933 [+]
Reference genome TAIR10
Source SRR2135658
Length 23
Mature sequence(if miRNA) 1 - GAGAGAGAGAUGUAAGGGAGACA - 23
Stem-loop(if miRNA) -GA   A         GG    C      AACGU       -         G  G
   GAG GAGAUGUAA  GAGA AGAAAA     GCGAGAG AGAGAAAGA UA G
   ||| |||||||||  |||| ||||||     ||||||| ||||||||| || U
   CUU CUUUACAUU  UUCU UCUUUU     UGUUUUU UUUUUUUUU AU C
UUC   A         -A    U      -----       G         G  A
Stem-loop sequence GAGAGAGAGAUGUAAGGGAGACAGAAAAAACGUGCGAGAGAGAGAAAGAGUAGGUCAUAGUUUUUUUUUGUUUUUGUUUUUCUUUCUUAUUACAUUUCAUUCCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_106265.4
ncRNA:23   ACAGAGGGAAUGUAGAGAGAGAG   1
  **|=||=||||*|||||||||||
targets:144   GUUUUCUCUUAAAUCUCUCUCUC   166

2.5 Arabidopsis thaliana SKU5 similar 5 (sks5), mRNA SKU5 similar 5(sks5) coding protein psRNATarget
NM_148720.3
ncRNA:23   ACAGAGGGAAUGUAGAGAGAGAG   1
  ***=|||=|||=|||||||||||
targets:14   CAAUUCCUUUAUAUCUCUCUCUC   36

2.5 Arabidopsis thaliana transmembrane protein mRNA transmembrane protein(AT3G13275) coding protein psRNATarget