ncRNA ID | novel_ath_miR329 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr3:11204829-11204933 [+] |
Reference genome | TAIR10 |
Source | SRR2135658 |
Length | 23 |
Mature sequence(if miRNA) | 1 - GAGAGAGAGAUGUAAGGGAGACA - 23 |
Stem-loop(if miRNA) |
-GA   A         GG    C      AACGU       -         G  G    GAG GAGAUGUAA  GAGA AGAAAA     GCGAGAG AGAGAAAGA UA G    ||| |||||||||  |||| ||||||     ||||||| ||||||||| || U    CUU CUUUACAUU  UUCU UCUUUU     UGUUUUU UUUUUUUUU AU C UUC   A         -A    U      -----       G         G  A |
Stem-loop sequence | GAGAGAGAGAUGUAAGGGAGACAGAAAAAACGUGCGAGAGAGAGAAAGAGUAGGUCAUAGUUUUUUUUUGUUUUUGUUUUUCUUUCUUAUUACAUUUCAUUCCUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_106265.4 |
|
2.5 | Arabidopsis thaliana SKU5 similar 5 (sks5), mRNA | SKU5 similar 5(sks5) | coding protein | psRNATarget | |||||||||
NM_148720.3 |
|
2.5 | Arabidopsis thaliana transmembrane protein mRNA | transmembrane protein(AT3G13275) | coding protein | psRNATarget |