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BaseInfo

ncRNA ID novel_ath_miR311
Species Arabidopsis thaliana
Class miRNA
Genome position Chr4:7479577-7479650 [-]
Reference genome TAIR10
Source SRR2135657;SRR2135658
Length 20
Mature sequence(if miRNA) 1 - AAAGAUUGUGUCAGAUGGCU - 20
Stem-loop(if miRNA) --    G    - G    A     -----A  AC    GU
  CUAU UUGA G GAUU UUGGU      CC  UUAA  U
  |||| |||| | |||| |||||      ||  ||||  A
  GGUA GACU U UUAG AAUCA      GG  AGUU  A
UC    -    G G    A     GAAAAA  AA    AC
Stem-loop sequence CUAUGUUGAGGGAUUAUUGGUACCACUUAAGUUAACAUUGAAAGGAAAAAGACUAAAGAUUGUGUCAGAUGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_101366.3
ncRNA:20   UCGGUAGACUGUGUUAGAAA   1
  |||||*||||||||*|||||
targets:1902   AGCCACCUGACACAUUCUUU   1921

2.5 Arabidopsis thaliana O-fucosyltransferase family protein mRNA O-fucosyltransferase family protein(AT1G14970) coding protein psRNATarget
NM_001332141.1
ncRNA:20   UCGGUAGACUGUGUUAGAAA   1
  |||||*||||||||*|||||
targets:1949   AGCCACCUGACACAUUCUUU   1968

2.5 Arabidopsis thaliana O-fucosyltransferase family protein mRNA O-fucosyltransferase family protein(AT1G14970) coding protein psRNATarget
NM_001332140.1
ncRNA:20   UCGGUAGACUGUGUUAGAAA   1
  |||||*||||||||*|||||
targets:2091   AGCCACCUGACACAUUCUUU   2110

2.5 Arabidopsis thaliana O-fucosyltransferase family protein mRNA O-fucosyltransferase family protein(AT1G14970) coding protein psRNATarget