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BaseInfo

ncRNA ID	novel_ath_miR305
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr3:11121113-11121168 [+]
Reference genome	TAIR10
Source	SRR2135657
Length	24
Mature sequence(if miRNA)	1 - AAGAGAAGAGGAGAGACGUGAUCA - 24
Stem-loop(if miRNA)	--            GA   GU     UC   AAGAGAAGAGGA  GAC  GAUCA  U   ||||||||||||  |||  |||||   UUUUUUUUUUUU  CUG  UUAGU  U UU            AA   GC     UC
Stem-loop sequence	AAGAGAAGAGGAGAGACGUGAUCAUCUUCUUGAUUCGGUCAAUUUUUUUUUUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK117935.1	ncRNA:24   ACUAGUGCAGAGAGGAGAAGAGAA   1   ||--|||||||||||||||||||| targets:101   UG--CACGUCUCUCCUCUUCUCUU   122 Target Full Sequence	0.0	Arabidopsis thaliana At2g15340 mRNA for unknown protein, complete cds, clone: RAFL19-12-N14	NA	coding protein	psRNATarget
BT004707.1	ncRNA:24   ACUAGUGCAGAGAGGAGAAGAGAA   1   ||--|||||||||||||||||||| targets:51   UG--CACGUCUCUCCUCUUCUCUU   72 Target Full Sequence	0.0	Arabidopsis thaliana At2g15340 gene, complete cds	NA	coding protein	psRNATarget
NM_001124134.2	ncRNA:24   ACUAGUGCAGAGAGGAGAAGAGAA   1   **|||||*|||||||||||||||| targets:165   CAAUCACCUCUCUCCUCUUCUCUU   188 Target Full Sequence	1.0	Arabidopsis thaliana Prolyl oligopeptidase family protein mRNA	Prolyl oligopeptidase family protein(AT1G76140)	coding protein	psRNATarget
NM_106263.4	ncRNA:24   ACUAGUGCAGAGAGGAGAAGAGAA   1   **|||||*|||||||||||||||| targets:154   CAAUCACCUCUCUCCUCUUCUCUU   177 Target Full Sequence	1.0	Arabidopsis thaliana Prolyl oligopeptidase family protein mRNA	Prolyl oligopeptidase family protein(AT1G76140)	coding protein	psRNATarget
NM_127094.2	ncRNA:24   ACUAGUGCAGAGAGGAGAAGAGAA   1   ||--||=||||||||||||||||| targets:165   UG--CAUGUCUCUCCUCUUCUCUU   186 Target Full Sequence	1.0	Arabidopsis thaliana glycine-rich protein mRNA	glycine-rich protein(AT2G15340)	coding protein	psRNATarget
AY088826.1	ncRNA:24   ACUAGUGCAGAGAGGAGAAGAGAA   1   ||--||=||||||||||||||||| targets:103   UG--CAUGUCUCUCCUCUUCUCUU   124 Target Full Sequence	1.0	Arabidopsis thaliana clone 9657 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_113658.3	ncRNA:24   ACUAGUGCAGAGAGGAGAAGAGAA   1   ***||||*||||||=||||||||| targets:97   GCUUCACCUCUCUCUUCUUCUCUU   120 Target Full Sequence	2.5	Arabidopsis thaliana N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (PBB1), mRNA	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein(PBB1)	coding protein	psRNATarget
NM_180310.1	ncRNA:24   ACUAGUGCAGAGAGGAGAAGAGAA   1   ***||||*||||||=||||||||| targets:38   GCUUCACCUCUCUCUUCUUCUCUU   61 Target Full Sequence	2.5	Arabidopsis thaliana N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (PBB1), mRNA	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein(PBB1)	coding protein	psRNATarget
NM_001203060.1	ncRNA:24   ACUAGUGCAGAGAGGAGAAGAGAA   1   ***||||*||||||=||||||||| targets:76   GCUUCACCUCUCUCUUCUUCUCUU   99 Target Full Sequence	2.5	Arabidopsis thaliana N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (PBB1), mRNA	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein(PBB1)	coding protein	psRNATarget
AY086464.1	ncRNA:24   ACUAGUGCAGAGAGGAGAAGAGAA   1   ***||||*||||||=||||||||| targets:14   GCUUCACCUCUCUCUUCUUCUCUU   37 Target Full Sequence	2.5	Arabidopsis thaliana clone 25264 mRNA, complete sequence	NA	coding protein	psRNATarget
BT003339.1	ncRNA:24   ACUAGUGCAGAGAGGAGAAGAGAA   1   ***||||*||||||=||||||||| targets:38   GCUUCACCUCUCUCUUCUUCUCUU   61 Target Full Sequence	2.5	Arabidopsis thaliana 20S proteasome beta subunit (PBB1) (At3g27430) mRNA, complete cds	NA	coding protein	psRNATarget