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BaseInfo

ncRNA ID novel_ath_miR290
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:14587676-14587730 [+]
Reference genome TAIR10
Source SRR2135656
Length 24
Mature sequence(if miRNA) 32 - AUUGGGUGUGAAUGUUAUGGUGAA - 55
Stem-loop(if miRNA) --     AUU          G   UUU
  CACUG   UAUUCAUAUU AGU   U
  |||||   |||||||||| |||   U
  GUGGU   GUAAGUGUGG UUA   U
AA     AUU          G   UUU
Stem-loop sequence CACUGAUUUAUUCAUAUUGAGUUUUUUUUUUAUUGGGUGUGAAUGUUAUGGUGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_105115.4
ncRNA:24   AAGUGGUAUUGUAAGUGUGGGUUA   1
  *|||==|||||||||||||||*||
targets:41   AUCAUUAUAACAUUCACACCCCAU   64

2.5 Arabidopsis thaliana AMP-dependent synthetase and ligase family protein (LACS3), mRNA AMP-dependent synthetase and ligase family protein(LACS3) coding protein psRNATarget