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BaseInfo

ncRNA ID	novel_ath_miR284
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr4:9701240-9701312 [-]
Reference genome	TAIR10
Source	SRR2135656
Length	24
Mature sequence(if miRNA)	50 - AGGUGGAAGAGAAGAGGAAGAGCA - 73
Stem-loop(if miRNA)	-AGGU               -  GCAUAAACCUAA           GGAAGAGAAGAGGAA GA            CUUAUA      ||||||||||||||| ||            |||||C      CUUUUUCUUCUUUUU CU            GAAUAA AGUAU               U  --------AAGA
Stem-loop sequence	AGGUGGAAGAGAAGAGGAAGAGCAUAAACCUAACUUAUACAAUAAGAGAAUCUUUUUUCUUCUUUUUCUAUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK229234.1	ncRNA:24   ACGAGAAGGAGAAGAGAAGGUGGA   1   |||||||||||||||||||||||| targets:160   UGCUCUUCCUCUUCUCUUCCACCU   183 Target Full Sequence	0.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-52-B15	NA	coding protein	psRNATarget
NM_117839.4	ncRNA:24   ACGAGAAGGAGAAGAGAAGGUGGA   1   |||||||||||||||||||||||| targets:160   UGCUCUUCCUCUUCUCUUCCACCU   183 Target Full Sequence	0.0	Arabidopsis thaliana auxin canalization protein (DUF828) mRNA	auxin canalization protein (DUF828)(AT4G17350)	coding protein	psRNATarget
NM_124960.2	ncRNA:24   ACGAGAAGGAGAAGAGAAGGUGGA   1   |*||=|*||||||||||||||||| targets:980   UCCUUUACCUCUUCUCUUCCACCU   1003 Target Full Sequence	1.0	Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA	Cysteine/Histidine-rich C1 domain family protein(AT5G55780)	coding protein	psRNATarget
BX827650.1	ncRNA:24   ACG----AGAAGGAGAAGAGAAGGUGGA   1   |||----|||||=||||||*|||||||| targets:371   UGCAACUUCUUCUUCUUCUGUUCCACCU   398 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS90ZC06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_119937.3	ncRNA:24   ACG----AGAAGGAGAAGAGAAGGUGGA   1   |||----|||||=||||||*|||||||| targets:409   UGCAACUUCUUCUUCUUCUGUUCCACCU   436 Target Full Sequence	2.5	Arabidopsis thaliana Integrase-type DNA-binding superfamily protein (ANT), mRNA	Integrase-type DNA-binding superfamily protein(ANT)	coding protein	psRNATarget
U40256.1	ncRNA:24   ACG----AGAAGGAGAAGAGAAGGUGGA   1   |||----|||||=||||||*|||||||| targets:409   UGCAACUUCUUCUUCUUCUGUUCCACCU   436 Target Full Sequence	2.5	Arabidopsis thaliana ovule development protein (AINTEGUMENTA) mRNA, complete cds	NA	coding protein	psRNATarget
BX826541.1	ncRNA:24   ACG----AGAAGGAGAAGAGAAGGUGGA   1   |||----|||||=||||||*|||||||| targets:403   UGCAACUUCUUCUUCUUCUGUUCCACCU   430 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB37ZE02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY080706.1	ncRNA:24   ACG----AGAAGGAGAAGAGAAGGUGGA   1   |||----|||||=||||||*|||||||| targets:298   UGCAACUUCUUCUUCUUCUGUUCCACCU   325 Target Full Sequence	2.5	Arabidopsis thaliana putative ovule development protein aintegumenta (At4g37750) mRNA, complete cds	NA	coding protein	psRNATarget
U44028.1	ncRNA:24   ACG----AGAAGGAGAAGAGAAGGUGGA   1   |||----|||||=||||||*|||||||| targets:216   UGCAACUUCUUCUUCUUCUGUUCCACCU   243 Target Full Sequence	2.5	Arabidopsis thaliana transcription factor CKC mRNA, complete cds	NA	coding protein	psRNATarget
U41339.1	ncRNA:24   ACG----AGAAGGAGAAGAGAAGGUGGA   1   |||----|||||=||||||*|||||||| targets:178   UGCAACUUCUUCUUCUUCUGUUCCACCU   205 Target Full Sequence	2.5	Arabidopsis thaliana ANT (AINTEGUMENTA) mRNA, complete cds	NA	coding protein	psRNATarget
AY117207.1	ncRNA:24   ACG----AGAAGGAGAAGAGAAGGUGGA   1   |||----|||||=||||||*|||||||| targets:141   UGCAACUUCUUCUUCUUCUGUUCCACCU   168 Target Full Sequence	2.5	Arabidopsis thaliana putative ovule development protein aintegumenta (At4g37750) mRNA, complete cds	NA	coding protein	psRNATarget