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BaseInfo

ncRNA ID novel_ath_miR279
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:15127910-15128006 [+]
Reference genome TAIR10
Source SRR2135656
Length 24
Mature sequence(if miRNA) 74 - AUUAGUGUUUCUGUAGGAGAGGUU - 97
Stem-loop(if miRNA) ---  A  G  -   GG    -    --   UA     AUUAU U G     A
   CU CU CU UAG  ACAU AAUG  GCU  GACUU     G U GGGUG A
   || || || |||  |||| ||||  |||  |||||     | | |||||
   GA GA GA GUC  UGUG UUAC  CGA  UUGGG     C A UUCAC U
UUG  -  G  U   UU    A    AU   --     -GGUU U G     A
Stem-loop sequence CUACUGCUUAGGGACAUAAUGGCUUAGACUUAUUAUGUUGGGGUGAAUACACUUGAUCUUGGGGGUUAGCUACAUUAGUGUUUCUGUAGGAGAGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK230036.1
ncRNA:24   UUGGAGAGGAUGUCUUUGUGAUUA   1
  ||||||||||||||||=|||||||
targets:2378   AACCUCUCCUACAGAAGCACUAAU   2401

1.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-60-F14 NA coding protein psRNATarget