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BaseInfo

ncRNA ID	novel_ath_miR275
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr2:10676466-10676553 [-]
Reference genome	TAIR10
Source	SRR2135656;SRR1262546
Length	23
Mature sequence(if miRNA)	66 - ACUGACAGAAGAGAGUGAGCACA - 88
Stem-loop(if miRNA)	--A         -   -         A   ---      UU    UA    CUGACAGAA GAG AGUGAGCAC CAA   AGGCAA  UGCA  U    ||||||||| ||| ||||||||| |||   ||||||  ||||    GACUGUCUU CUC UCACUCGUG GUU   UUCGUU  ACGU  C UUA         U   G         C   CUC      -C    UA
Stem-loop sequence	ACUGACAGAAGAGAGUGAGCACACAAAGGCAAUUUGCAUAUCAUUGCACUUGCUUCUCUUGCGUGCUCACUGCUCUUUCUGUCAGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_128940.2	ncRNA:23   ACACGAGUGAGAGAAGACAGUCA   1   |*||||=|||||||||||||||| targets:786   UUUGCUUACUCUCUUCUGUCAGU   808 Target Full Sequence	1.0	Arabidopsis thaliana squamosa promoter binding protein-like 3 (SPL3), mRNA	squamosa promoter binding protein-like 3(SPL3)	coding protein	psRNATarget
AK118179.1	ncRNA:23   ACACGAGUGAGAGAAGACAGUCA   1   |*||||=|||||||||||||||| targets:563   UUUGCUUACUCUCUUCUGUCAGU   585 Target Full Sequence	1.0	Arabidopsis thaliana At2g33810 mRNA for putative squamosa-promoter binding protein, complete cds, clone: RAFL19-50-A02	NA	coding protein	psRNATarget
AY084312.1	ncRNA:23   ACACGAGUGAGAGAAGACAGUCA   1   |*||||=|||||||||||||||| targets:519   UUUGCUUACUCUCUUCUGUCAGU   541 Target Full Sequence	1.0	Arabidopsis thaliana clone 10375 mRNA, complete sequence	NA	coding protein	psRNATarget
AJ011633.1	ncRNA:23   ACACGAGUGAGAGAAGACAGUCA   1   |*||||=|||||||||||||||| targets:469   UUUGCUUACUCUCUUCUGUCAGU   491 Target Full Sequence	1.0	Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 3	NA	coding protein	psRNATarget
Y09427.1	ncRNA:23   ACACGAGUGAGAGAAGACAGUCA   1   |*||||=|||||||||||||||| targets:469   UUUGCUUACUCUCUUCUGUCAGU   491 Target Full Sequence	1.0	A.thaliana mRNA for squamosa-promoter binding protein like 3	NA	coding protein	psRNATarget
AJ242959.1	ncRNA:23   ACACGAGUGAGAGAAGACAGUCA   1   |*||||=|||||||||||||||| targets:469   UUUGCUUACUCUCUUCUGUCAGU   491 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 3 (SPL3 gene)	NA	coding protein	psRNATarget
NM_105584.6	ncRNA:23   ACACGAGUGAGAGAAGACAGUCA   1   *||||||*||||||||||||||* targets:1296   CGUGCUCUCUCUCUUCUGUCAGC   1318 Target Full Sequence	2.0	Arabidopsis thaliana Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein mRNA	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein(AT1G69170)	coding protein	psRNATarget
BX815862.1	ncRNA:23   ACACGAGUGAGAGAAGACAGUCA   1   *||||||*||||||||||||||* targets:1266   CGUGCUCUCUCUCUUCUGUCAGC   1288 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH13ZC06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK227964.1	ncRNA:23   ACACGAGUGAGAGAAGACAGUCA   1   *||||||*||||||||||||||* targets:1121   CGUGCUCUCUCUCUUCUGUCAGC   1143 Target Full Sequence	2.0	Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 6, complete cds, clone: RAFL14-51-E10	NA	coding protein	psRNATarget
AJ011643.1	ncRNA:23   ACACGAGUGAGAGAAGACAGUCA   1   *||||||*||||||||||||||* targets:978   CGUGCUCUCUCUCUUCUGUCAGC   1000 Target Full Sequence	2.0	Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 6	NA	coding protein	psRNATarget
BT006436.1	ncRNA:23   ACACGAGUGAGAGAAGACAGUCA   1   *||||||*||||||||||||||* targets:907   CGUGCUCUCUCUCUUCUGUCAGC   929 Target Full Sequence	2.0	Arabidopsis thaliana At1g69170 gene, complete cds	NA	coding protein	psRNATarget
AF370612.1	ncRNA:23   ACACGAGUGAGAGAAGACAGUCA   1   *||||||*||||||||||||||* targets:874   CGUGCUCUCUCUCUUCUGUCAGC   896 Target Full Sequence	2.0	Arabidopsis thaliana similar to squamosa-promoter binding protein 1 isolog gi|1707009 (F4N2.13) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001335350.1	ncRNA:23   ACACGAGUGAGAGAAGACAGUCA   1   *||-||=*=|||||||||||||| targets:4650   AGU-CUUCUUCUCUUCUGUCAGU   4671 Target Full Sequence	3.0	Arabidopsis thaliana Cytochrome b/b6 protein mRNA	Cytochrome b/b6 protein(AT2G07718)	coding protein	psRNATarget