ncRNA ID | novel_ath_miR268 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr1:18548147-18548330 [+] |
Reference genome | TAIR10 |
Source | ERR1297332 |
Length | 24 |
Mature sequence(if miRNA) | 161 - GUGACUAUUUUGCAAAUUAUGAAU - 184 |
Stem-loop(if miRNA) |
--                                                                            AUAUA     -A   A   UCAUAAUUUGCAAAAUAGUCACUUUUCACUGUUUGAUUCGUACACUUGGAUUGUACAUCACUUUUAGUGUACAAAU     UAAAA  UAC C   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||  ||| A   AGUAUUAAACGUUUUAUCAGUGAAAAGUGACAAACUAAGCAUGUGAACCUAACAUGUAGUGAAAAUCACAUGUUUA     AUUUU  AUG G UA                                                                            ----C     AC   C |
Stem-loop sequence | UCAUAAUUUGCAAAAUAGUCACUUUUCACUGUUUGAUUCGUACACUUGGAUUGUACAUCACUUUUAGUGUACAAAUAUAUAUAAAAAUACACAGCGUACAUUUUACAUUUGUACACUAAAAGUGAUGUACAAUCCAAGUGUACGAAUCAAACAGUGAAAAGUGACUAUUUUGCAAAUUAUGAAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_105281.3 |
|
2.5 | Arabidopsis thaliana Plant thionin mRNA | Plant thionin(AT1G66100) | coding protein | psRNATarget |