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BaseInfo

ncRNA ID novel_ath_miR260
Species Arabidopsis thaliana
Class miRNA
Genome position Chr4:192112-192189 [+]
Reference genome TAIR10
Source SRR2087892
Length 24
Mature sequence(if miRNA) 55 - AUAUUAUUUUUGGACCUUGUGCUC - 78
Stem-loop(if miRNA) -- UG --       UUU        ----A   ---AAA    U
  G  C  GGUCCGG   AAAUAAUA     CGA      UAUA A
  |  |  |||||||   ||||||||     |||      ||||
  C  G  CCAGGUU   UUUAUUAU     GCU      AUAU C
CU GU UU       ---        ACUCG   GGACAC    U
Stem-loop sequence GUGCGGUCCGGUUUAAAUAAUAACGAAAAUAUAUACUUAUACACAGGUCGGCUCAUAUUAUUUUUGGACCUUGUGCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_113684.1
ncRNA:24   CU-CGUGUUCCAGGUUUUUAUUAUA   1
  ||-|=|**||||||||||||||||*
targets:133   GAUGUAAUAGGUCCAAAAAUAAUAC   157

3.0 Arabidopsis thaliana Plant self-incompatibility protein S1 family partial mRNA Plant self-incompatibility protein S1 family(AT3G27680) coding protein psRNATarget