ncRNA ID | novel_ath_miR260 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr4:192112-192189 [+] |
Reference genome | TAIR10 |
Source | SRR2087892 |
Length | 24 |
Mature sequence(if miRNA) | 55 - AUAUUAUUUUUGGACCUUGUGCUC - 78 |
Stem-loop(if miRNA) |
-- UG --       UUU        ----A   ---AAA    U   G  C  GGUCCGG   AAAUAAUA     CGA      UAUA A   |  |  |||||||   ||||||||     |||      ||||   C  G  CCAGGUU   UUUAUUAU     GCU      AUAU C CU GU UU       ---        ACUCG   GGACAC    U |
Stem-loop sequence | GUGCGGUCCGGUUUAAAUAAUAACGAAAAUAUAUACUUAUACACAGGUCGGCUCAUAUUAUUUUUGGACCUUGUGCUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_113684.1 |
|
3.0 | Arabidopsis thaliana Plant self-incompatibility protein S1 family partial mRNA | Plant self-incompatibility protein S1 family(AT3G27680) | coding protein | psRNATarget |