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BaseInfo

ncRNA ID	novel_ath_miR229
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr3:15613298-15613350 [+]
Reference genome	TAIR10
Source	SRR1986039
Length	22
Mature sequence(if miRNA)	1 - AGAGAGAGUGUAGAAAGUUUCU - 22
Stem-loop(if miRNA)	--           AG  -        A   AGAGAGAGUGU  AA AGUUUCUC U   |||||||||||  || ||||||||   UCUCUCUCAUA  UU UCAAAGAG A UA           GA  C        U
Stem-loop sequence	AGAGAGAGUGUAGAAAGUUUCUCAUAUGAGAAACUCUUAGAUACUCUCUCUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_126297.5	ncRNA:22   UCUUUGAAAGAUGUGAGAGAGA   1   |||||||||||||||||||||| targets:1390   AGAAACUUUCUACACUCUCUCU   1411 Target Full Sequence	0.0	Arabidopsis thaliana NAD(P)-binding Rossmann-fold superfamily protein mRNA	NAD(P)-binding Rossmann-fold superfamily protein(AT2G02400)	coding protein	psRNATarget
NM_101498.4	ncRNA:22   UCUUUGAAAGAUGUGAGAGAGA   1   ||||*||*|||||||||||||| targets:261   AGAAUCUAUCUACACUCUCUCU   282 Target Full Sequence	2.0	Arabidopsis thaliana plant/protein (DUF2358) mRNA	plant/protein (DUF2358)(AT1G16320)	coding protein	psRNATarget
BX817915.1	ncRNA:22   UCUUUGAAAGAUGUGAGAGAGA   1   ||||*||*|||||||||||||| targets:225   AGAAUCUAUCUACACUCUCUCU   246 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL4ZD09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AF462832.1	ncRNA:22   UCUUUGAAAGAUGUGAGAGAGA   1   ||||*||*|||||||||||||| targets:227   AGAAUCUAUCUACACUCUCUCU   248 Target Full Sequence	2.0	Arabidopsis thaliana At1g16320/F3O9_12 mRNA, complete cds	NA	coding protein	psRNATarget
AY142029.1	ncRNA:22   UCUUUGAAAGAUGUGAGAGAGA   1   ||||*||*|||||||||||||| targets:131   AGAAUCUAUCUACACUCUCUCU   152 Target Full Sequence	2.0	Arabidopsis thaliana At1g16320/F3O9_12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001085269.2	ncRNA:22   UCUUUGAAAGAUGUGAGAGAGA   1   *|*|||*|||||||||=||||| targets:150   CGUAACCUUCUACACUUUCUCU   171 Target Full Sequence	2.5	Arabidopsis thaliana SABRE-like protein mRNA	SABRE-like protein(AT5G49680)	coding protein	psRNATarget