ncRNA ID | novel_ath_miR228 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr2:16061972-16062044 [+] |
Reference genome | TAIR10 |
Source | SRR1986039 |
Length | 21 |
Mature sequence(if miRNA) | 1 - AAGCUCAGGAGGGAUAGCGCC - 21 |
Stem-loop(if miRNA) |
--          G           --U   -   C  A   AAGCUCAGGA GGAUAGCGCCA   GAU GAU AC U   |||||||||| |||||||||||   ||| ||| ||   UUUGAGUCCU CCUAUCGCGGU   UUA CUA UG U AC          A           UUU   U   U  C |
Stem-loop sequence | AAGCUCAGGAGGGAUAGCGCCAUGAUGAUCACAUUCGUUAUCUAUUUUUUGGCGCUAUCCAUCCUGAGUUUCA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AY085124.1 |
|
3.0 | Arabidopsis thaliana clone 13209 mRNA, complete sequence | NA | coding protein | psRNATarget | |||||||||
BX825313.1 |
|
3.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL28ZF12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget |