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BaseInfo

ncRNA ID novel_ath_miR228
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:16061972-16062044 [+]
Reference genome TAIR10
Source SRR1986039
Length 21
Mature sequence(if miRNA) 1 - AAGCUCAGGAGGGAUAGCGCC - 21
Stem-loop(if miRNA) --          G           --U   -   C  A
  AAGCUCAGGA GGAUAGCGCCA   GAU GAU AC U
  |||||||||| |||||||||||   ||| ||| ||
  UUUGAGUCCU CCUAUCGCGGU   UUA CUA UG U
AC          A           UUU   U   U  C
Stem-loop sequence AAGCUCAGGAGGGAUAGCGCCAUGAUGAUCACAUUCGUUAUCUAUUUUUUGGCGCUAUCCAUCCUGAGUUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY085124.1
ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1
  ****||||||||||||||||*
targets:463   UUGUCUAUCCCUCCUGAGCUA   483

3.0 Arabidopsis thaliana clone 13209 mRNA, complete sequence NA coding protein psRNATarget
BX825313.1
ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1
  ****||||||||||||||||*
targets:802   UUGUCUAUCCCUCCUGAGCUA   822

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL28ZF12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget