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BaseInfo

ncRNA ID novel_ath_miR227
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:1040952-1041032 [+]
Reference genome TAIR10
Source SRR1986039
Length 20
Mature sequence(if miRNA) 62 - UGUGUUCUCAGGUCACCCCU - 81
Stem-loop(if miRNA) --GA     A  U       --UA  CU        UUCAAA
    GUGGC UG GAACACA    UC  AUGGUUUC      U
    ||||| || |||||||    ||  ||||||||
    CACUG AC CUUGUGU    AG  UACCAAAG      U
UCCC     G  U       UUUG  -U        UUACCU
Stem-loop sequence GAGUGGCAUGUGAACACAUAUCCUAUGGUUUCUUCAAAUUUCCAUUGAAACCAUUGAGUUUUGUGUUCUCAGGUCACCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_121459.5
ncRNA:20   UCCCCACUGGACUCUUGUGU   1
  ||||||||||||||||||||
targets:1652   AGGGGUGACCUGAGAACACA   1671

0.0 Arabidopsis thaliana Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein mRNA Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein(AT5G14550) coding protein psRNATarget