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BaseInfo

ncRNA ID novel_ath_miR221
Species Arabidopsis thaliana
Class miRNA
Genome position Chr4:15218595-15218682 [+]
Reference genome TAIR10
Source SRR1986039
Length 25
Mature sequence(if miRNA) 1 - GAGACUUGAGACAGAACAUUGAUCC - 25
Stem-loop(if miRNA) --     UU     A      U     ---  -  U    CCC  G
  GAGAC  GAGAC GAACAU GAUCC   UG CU GGUA   UC G
  |||||  ||||| |||||| |||||   || || ||||   || C
  CUUUG  CUUUG CUUGUA CUAGG   AC GA CUAU   AG U
CA     UU     G      -     UAU  A  U    AAA  U
Stem-loop sequence GAGACUUGAGACAGAACAUUGAUCCUGCUUGGUACCCUCGGCUUGAAAAUAUCUAGACAUAUGGAUCAUGUUCGGUUUCUUGUUUCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BX820055.1
ncRNA:25   CCUA-GUUACAAGACAGAGUUCAGAG   1
  *|||-|||||||||*|||||||||||
targets:1202   AGAUGCAAUGUUCUCUCUCAAGUCUC   1227

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS69ZD05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget