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BaseInfo

ncRNA ID novel_ath_miR218
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:10378298-10378515 [+]
Reference genome TAIR10
Source SRR1986039
Length 21
Mature sequence(if miRNA) 198 - AGAGUAGGGUUGGAGAUGCCC - 218
Stem-loop(if miRNA) --UG              C  UUU     U   ACUAACUAUAUUCAUUAGCAACUUAAUUCUACAUUGAUUUUAGAGUAUAAGAUAAGAGAAAUUUUUGUGUUGCCAA
    AUUUUCAAUUUUAC CU   GUAAA UCU                                                                            U
    |||||||||||||| ||   ||||| |||                                                                            U
    UAGAGGUUGGGAUG GA   CAUUU UAC                                                                            U
CCCG              A  -UU     U   GUUUUGUAAAGAGAUUGGGAUGAGAUAUUAACUAAGAUUUUAUCUCUAAAGACGUUGAGAUAUAUAUUCACAAUUG
Stem-loop sequence UGAUUUUCAAUUUUACCCUUUUGUAAAUUCUACUAACUAUAUUCAUUAGCAACUUAAUUCUACAUUGAUUUUAGAGUAUAAGAUAAGAGAAAUUUUUGUGUUGCCAAUUUGUUAACACUUAUAUAUAGAGUUGCAGAAAUCUCUAUUUUAGAAUCAAUUAUAGAGUAGGGUUAGAGAAAUGUUUUGCAUUUUUACUUAGAGUAGGGUUGGAGAUGCCC