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BaseInfo

ncRNA ID	ath-miRf10456-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - UCACUCGACCAGGGGGUCGAGUA - NA
Stem-loop(if miRNA)	G          AGGG             GGUAGAGUGAAU     AG  ---------    U  AGUGGUGUGGUGUAGUGA    CGACCAUGGGGUCGAGUGGUGUCAUCGA AU AUACUCGACC    GGUUGAGUGAUGU            GGCCG  UG         AUGG CA                  UACU                            G || ||||||||||    |||||||||||||            |||||  ||         |||| ||                  |||| UG UAUGAGCUGG    CCAGCUCACUGUA            CUCGG  UA         GAUG AG                  CUGG                            U   G          GGGA             ----------AC     --  AGAAGGUUA    -  ------------------    GGCACCAGCUCAUUGGUAUCGAGUCCGG
Stem-loop sequence	AUGAUACUCGACCAGGGGGUUGAGUGAUGUGGUAGAGUGAAUGGCCGAGUGAUGGUCAAGUGGUGUGGUGUAGUGAUACUCGACCAUGGGGUCGAGUGGUGUCAUCGAGUGGCCUGAGCUAUGGUUACUCGACCACGGGGUCGAGUAGAUUGGAAGAAUGGCUCCAAUGUCACUCGACCAGGGGGUCGAGUAUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT015478.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCACU   1   ||||||||||||*|||||||||| targets:137   UACUCGACCCCCAGGUCGAGUGA   159 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCACU   1   ||||||||||||*|||||||||| targets:137   UACUCGACCCCCAGGUCGAGUGA   159 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCACU   1   |||||||||||||||||||||** targets:182   UACUCGACCCCCUGGUCGAGUAU   204 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCACU   1   *||||||||||||||||||||** targets:231   CACUCGACCCCCUGGUCGAGUAU   253 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCACU   1   |||||||||||||||||||||** targets:182   UACUCGACCCCCUGGUCGAGUAU   204 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCACU   1   *||||||||||||||||||||** targets:231   CACUCGACCCCCUGGUCGAGUAU   253 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCACU   1   |||||||||||||||||||||** targets:309   UACUCGACCCCCUGGUCGAGUAU   331 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT025674.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCACU   1   ||||=||||||||||||*||||| targets:143   UACUUGACCCCCUGGUCUAGUGA   165 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCACU   1   |||*|||||||||||||||||** targets:584   UACYCGACCCCCUGGUCGAGUAU   606 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCACU   1   *||||||||||||||||||||*= targets:91   CACUCGACCCCCUGGUCGAGUAG   113 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCACU   1   *||||||||||*||||||||||* targets:1210   CACUCGACCCCGUGGUCGAGUGU   1232 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
EF183192.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCA-CU   1   *||||||||||||||||||||-|| targets:125   CACUCGACCCCCUGGUCGAGUAGA   148 Target Full Sequence	3.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCA-CU   1   *||||||||||||||||||||-|| targets:500   CACUCGACCCCCUGGUCGAGUAGA   523 Target Full Sequence	3.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCA-CU   1   *||||||||||||||||||||-|| targets:500   CACUCGACCCCCUGGUCGAGUAGA   523 Target Full Sequence	3.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:23   AUGAGCUGGGGGACCAGCUCA-CU   1   *||||||||||||||||||||-|| targets:1572   CACUCGACCCCCUGGUCGAGUAGA   1595 Target Full Sequence	3.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget