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BaseInfo

ncRNA ID	ath-miR5636
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:18549959-18550036 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	5 - CGUAGUUGCAGAGCUUGACGG - 25
Stem-loop(if miRNA)	GU   U  A          GCGC    GUUU  UC AGAUC  AGU GC GAGCUUGACG    UCAU    AC  U |||||  ||| || ||||||||||    ||||    ||  U UUUGG  UCG CG UUCGGACUGC    AGUA    UG  U      AU   C  A          ----    -AAU  UU
Stem-loop sequence	AGAUCGUAGUUGCAGAGCUUGACGGCGCUCAUGUUUACUCUUUUUGUUAAAUGACGUCAGGCUUAGCCGCUUAGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK227902.1	ncRNA:21   GGCAGUUCGAGACGUUGAUGC   1   ||||||||||||||||||||| targets:141   CCGUCAAGCUCUGCAACUACG   161 Target Full Sequence	0.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-47-C13	NA	coding protein	psRNATarget
AY922998.1	ncRNA:21   GGCAGUUCGAGACGUUGAUGC   1   ||||||||||||||||*|||* targets:64   CCGUCAAGCUCUGCAAGUACA   84 Target Full Sequence	2.5	Arabidopsis thaliana trans-acting siRNA1a primary transcript upstream region mRNA sequence	NA	coding protein	psRNATarget
NM_001332336.1	ncRNA:21   GGCAGUUCGAGACGUUGAUGC   1   *=|||==*||||||||||||| targets:113   GUGUCGGCCUCUGCAACUACG   133 Target Full Sequence	3.0	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT1G18193)	coding protein	psRNATarget
NM_001340285.1	ncRNA:21   GGCAGUUCGAGACGUUGAUGC   1   *=|||==*||||||||||||| targets:253   GUGUCGGCCUCUGCAACUACG   273 Target Full Sequence	3.0	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT4G00953)	coding protein	psRNATarget
AK227999.1	ncRNA:21   GGCAGUUCGAGACGUUGAUGC   1   *=|||==*||||||||||||| targets:161   GUGUCGGCCUCUGCAACUACG   181 Target Full Sequence	3.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-52-P08	NA	coding protein	psRNATarget

Reference

1	PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012).