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BaseInfo

ncRNA ID novel_ath_miR187
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:12673433-12673485 [-]
Reference genome TAIR10
Source SRR1842775
Length 24
Mature sequence(if miRNA) 1 - AGUGUAUGAUUGAGUAUAAGAACU - 24
Stem-loop(if miRNA) --      G      A    -   A A
  UUUUUG AUUCAA UAUG ACU G U
  |||||| |||||| |||| ||| |
  AAGAAU UGAGUU GUAU UGA C A
UC      A      A    G   G U
Stem-loop sequence UUUUUGGAUUCAAAUAUGACUAGAUAUCGAGUGUAUGAUUGAGUAUAAGAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_125027.1
ncRNA:24   UCA--AGAAUAUGAGUUAGUAUGUGA   1
  *||--||||||||||||*|||||||*
targets:919   UGUCGUCUUAUACUCAACCAUACACC   944

2.5 Arabidopsis thaliana F-box/RNI-like/FBD-like domains-containing protein partial mRNA F-box/RNI-like/FBD-like domains-containing protein(AT5G56440) coding protein psRNATarget
BX814147.1
ncRNA:24   UCAAGAAUAUGAGUUAGUAUGUGA   1
  =|*|*|||||*|||||||||||=|
targets:223   GGGUAUUAUAGUCAAUCAUACAUU   246

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB59ZC06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget