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BaseInfo

ncRNA ID	novel_ath_miR180
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:8452579-8452799 [-]
Reference genome	TAIR10
Source	SRR1842775
Length	24
Mature sequence(if miRNA)	198 - UUUGUAGAUUUAACCUGGGUCAAC - 221
Stem-loop(if miRNA)	--     A        C  GG       A  CCCCUCCUUCCU       U    ----------CAC   UCAUGUUCACAUUGGUUUAUAAUCAUAUUUUUAAUAAUGUACUUACAAAAUC   UUUGU GAUUUAAC UG  UCAACUG CA            UAGUGGA CCGC             UGA                                                    A   ||||| |||||||| ||  ||||||| ||            ||||||| ||||             |||                                                    A   AAAUA CUAAAUUG AC  AGUUGAC GU            AUCAUCU GGUG             AAC                                                    C UU     -        -  UA       -  ------------       -    AAAAAGAAGAAAA   CAAAUAUUAGUAUUAUCUGGUGAAUGAAGUUGGUUUUUUUCAAAAACUUCAU
Stem-loop sequence	UUUGUAGAUUUAACCUGGGUCAACUGACACCCCUCCUUCCUUAGUGGAUCCGCCACUGAUCAUGUUCACAUUGGUUUAUAAUCAUAUUUUUAAUAAUGUACUUACAAAAUCAACUACUUCAAAAACUUUUUUUGGUUGAAGUAAGUGGUCUAUUAUGAUUAUAAACCAAAAAAGAAGAAAAAGUGGUCUACUAUGCAGUUGAAUCAGUUAAAUCAUAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY133787.1	ncRNA:24   CAA--CUGGGUCCAAUUUAGAUGUUU   1   |||--|*||||*|||||||||||*|| targets:227   GUUACGUCCCAUGUUAAAUCUACCAA   252 Target Full Sequence	2.5	Arabidopsis thaliana clone U11912 putative antifungal protein PDF1.2 (At5g44420) mRNA, complete cds	NA	coding protein	psRNATarget
AY063779.1	ncRNA:24   CAA--CUGGGUCCAAUUUAGAUGUUU   1   |||--|*||||*|||||||||||*|| targets:275   GUUACGUCCCAUGUUAAAUCUACCAA   300 Target Full Sequence	2.5	Arabidopsis thaliana putative antifungal protein PDF1.2 (At5g44420) mRNA, complete cds	NA	coding protein	psRNATarget
NM_123809.4	ncRNA:24   CAA--CUGGGUCCAAUUUAGAUGUUU   1   |||--|*||||*|||||||||||*|| targets:315   GUUACGUCCCAUGUUAAAUCUACCAA   340 Target Full Sequence	2.5	Arabidopsis thaliana plant defensin 1.2 (PDF1.2), mRNA	plant defensin 1.2(PDF1.2)	coding protein	psRNATarget