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BaseInfo

ncRNA ID novel_ath_miR179
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:11580703-11580761 [-]
Reference genome TAIR10
Source SRR1842775
Length 22
Mature sequence(if miRNA) 38 - AGGAAGUCGGCUGGGCGAUCUC - 59
Stem-loop(if miRNA) ---    A    G  G        ---   UA
   AGGA GUCG CU GGCGAUCU   CCC  C
   |||| |||| || ||||||||   |||
   UCCU CAGC GG CUGCUGGA   GGG  U
UAU    C    -  G        AUU   CU
Stem-loop sequence AGGAAGUCGGCUGGGCGAUCUCCCUACUUCGGGUUAAGGUCGUCGGGCGACCUCCUUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001335310.1
ncRNA:22   CUCUAGCGGGUCGGCUGAAGGA   1
  *||||||||||*|||||||||*
targets:371   AAGAUCGCCCAACCGACUUCCC   392

2.5 Arabidopsis thaliana SCR-like 16 (SCRL16), mRNA SCR-like 16(SCRL16) coding protein psRNATarget