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BaseInfo

ncRNA ID novel_ath_miR172
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:11611192-11611246 [-]
Reference genome TAIR10
Source SRR1842774
Length 24
Mature sequence(if miRNA) 1 - AAGAAGACCCUUUAAAAACUCUUG - 24
Stem-loop(if miRNA) --            A A     AAA  A
  AGGGUUUUUAAA G UCUUU   GA U
  |||||||||||| | |||||   ||
  UCUCAAAAAUUU C AGAAG   CU U
GU            C C     -AA  U
Stem-loop sequence AGGGUUUUUAAAAGAUCUUUAAAGAAUUUUCAAGAAGACCCUUUAAAAACUCUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001160870.1
ncRNA:24   GUU-CUCAAAAAUUUCCCAGAAGAA   1
  =||-|=|*|||||||||*|||||||
targets:111   UAAUGGGCUUUUAAAGGUUCUUCUU   135

2.5 Arabidopsis thaliana Ubiquinol-cytochrome C reductase hinge protein partial mRNA Ubiquinol-cytochrome C reductase hinge protein(AT1G15120) coding protein psRNATarget