ncRNA ID | novel_ath_miR171 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr5:11639710-11639926 [+] |
Reference genome | TAIR10 |
Source | SRR1842774;SRR1164433 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGAGUUUUAAAAGAUUUACAAGGG - 24 |
Stem-loop(if miRNA) |
--  AG        G                            A  A         U  U      A          UCCC       --UAUUUCAAAACACU     A   AG  UUUUAAAA AUUUACAAGGGAUUUUAAAAGGGUUUUA AA AUUUACAAG AA UUUAAA GGUUUUAAAA    UUGUAAA                UUUAA C   ||  |||||||| |||||||||||||||||||||||||||| || ||||||||| || |||||| ||||||||||    |||||||                |||||   UC  AAAAUUUU UAAAUGUUCUCUAAAAUUUUCCCAAAAU UU UAAAUGUUC UU AAAUUU CCGAAAUUUU    AAUAUUU                AAAUU C UU  CU        A                            G  A         U  U      C          -CUA       CUCAAAAAUUUCUAAC     C |
Stem-loop sequence | AGAGUUUUAAAAGAUUUACAAGGGAUUUUAAAAGGGUUUUAAAAAAUUUACAAGUAAUUUUAAAAGGUUUUAAAAUCCCUUGUAAAUAUUUCAAAACACUUUUAAACCCUUAAACAAUCUUUAAAAACUCUUUAUAAAUCUUUUAAAGCCCUUUAAAUUUUCUUGUAAAUAUUGUAAAACCCUUUUAAAAUCUCUUGUAAAUAUUUUAAAAUCCUUU |