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BaseInfo

ncRNA ID novel_ath_miR171
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:11639710-11639926 [+]
Reference genome TAIR10
Source SRR1842774;SRR1164433
Length 24
Mature sequence(if miRNA) 1 - AGAGUUUUAAAAGAUUUACAAGGG - 24
Stem-loop(if miRNA) --  AG        G                            A  A         U  U      A          UCCC       --UAUUUCAAAACACU     A
  AG  UUUUAAAA AUUUACAAGGGAUUUUAAAAGGGUUUUA AA AUUUACAAG AA UUUAAA GGUUUUAAAA    UUGUAAA                UUUAA C
  ||  |||||||| |||||||||||||||||||||||||||| || ||||||||| || |||||| ||||||||||    |||||||                |||||
  UC  AAAAUUUU UAAAUGUUCUCUAAAAUUUUCCCAAAAU UU UAAAUGUUC UU AAAUUU CCGAAAUUUU    AAUAUUU                AAAUU C
UU  CU        A                            G  A         U  U      C          -CUA       CUCAAAAAUUUCUAAC     C
Stem-loop sequence AGAGUUUUAAAAGAUUUACAAGGGAUUUUAAAAGGGUUUUAAAAAAUUUACAAGUAAUUUUAAAAGGUUUUAAAAUCCCUUGUAAAUAUUUCAAAACACUUUUAAACCCUUAAACAAUCUUUAAAAACUCUUUAUAAAUCUUUUAAAGCCCUUUAAAUUUUCUUGUAAAUAUUGUAAAACCCUUUUAAAAUCUCUUGUAAAUAUUUUAAAAUCCUUU