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BaseInfo

ncRNA ID	novel_ath_miR162
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr3:13332448-13332590 [+]
Reference genome	TAIR10
Source	SRR1842774;SRR1842775;SRR1163504;SRR1163720;SRR1164433;SRR1164434
Length	24
Mature sequence(if miRNA)	1 - UUUUGUUGGUAAUAGAUUUUUGAU - 24
Stem-loop(if miRNA)	--     U               G                           A       C   A A   AA   UUUUG UGGUAAUAGAUUUUU AUAUAUCGCAUGUUUAGUGAGAUUCAA CUUUUAU UAA A GUA  U   ||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| | |||  A   GAAAC ACCAUUAUCUAAGAA UAUAUAGUGUACAAAUCACUCUAAGUU GAAAAUA AUU U UAU  G UG     C               A                           C       A   C A   AU
Stem-loop sequence	UUUUGUUGGUAAUAGAUUUUUGAUAUAUCGCAUGUUUAGUGAGAUUCAAACUUUUAUCUAAAAAGUAAAUAGUAUAUAUCUUAAAUAAAAGCUUGAAUCUCACUAAACAUGUGAUAUAUAAAGAAUCUAUUACCACCAAAGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001331617.1	ncRNA:24   UAGUUUUUAGAUAAUGGUUGUUUU   1   *||||||||||||||||||||*|| targets:1808   UUCAAAAAUCUAUUACCAACACAA   1831 Target Full Sequence	1.5	Arabidopsis thaliana Rho termination factor (RHON1), mRNA	Rho termination factor(RHON1)	coding protein	psRNATarget
NM_001331618.1	ncRNA:24   UAGUUUUUAGAUAAUGGUUGUUUU   1   *||||||||||||||||||||*|| targets:1655   UUCAAAAAUCUAUUACCAACACAA   1678 Target Full Sequence	1.5	Arabidopsis thaliana Rho termination factor (RHON1), mRNA	Rho termination factor(RHON1)	coding protein	psRNATarget
NM_100500.4	ncRNA:24   UAGUUUUUAGAUAAUGGUUGUUUU   1   *||||||||||||||||||||*|| targets:1514   UUCAAAAAUCUAUUACCAACACAA   1537 Target Full Sequence	1.5	Arabidopsis thaliana Rho termination factor (RHON1), mRNA	Rho termination factor(RHON1)	coding protein	psRNATarget