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BaseInfo

ncRNA ID novel_ath_miR153
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:2164051-2164100 [+]
Reference genome TAIR10
Source SRR1842772
Length 24
Mature sequence(if miRNA) 1 - AUGUACUCGGAAAUUUGUAACUUU - 24
Stem-loop(if miRNA) ----    A           GUA  UU
    AUGU CUCGGAAAUUU   AC  U
    |||| |||||||||||   ||
    UAUA GAGCCUUUGGG   UG  U
AUUA    G           --G  UC
Stem-loop sequence AUGUACUCGGAAAUUUGUAACUUUUCUGUGGGGUUUCCGAGGAUAUAUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_114412.3
ncRNA:24   UUUC--------AAUGUUUAAAGGCUCAUGUA   1
  ||||--------||||*==|||||||||||||
targets:1319   AAAGGCGAGCUUUUACUGGUUUCCGAGUACAU   1350

3.0 Arabidopsis thaliana Concanavalin A-like lectin protein kinase family protein mRNA Concanavalin A-like lectin protein kinase family protein(AT3G45430) coding protein psRNATarget
NM_001339206.1
ncRNA:24   UUUC--------AAUGUUUAAAGGCUCAUGUA   1
  ||||--------||||*==|||||||||||||
targets:1389   AAAGGCGAGCUUUUACUGGUUUCCGAGUACAU   1420

3.0 Arabidopsis thaliana Concanavalin A-like lectin protein kinase family protein mRNA Concanavalin A-like lectin protein kinase family protein(AT3G45430) coding protein psRNATarget
NM_001339205.1
ncRNA:24   UUUC--------AAUGUUUAAAGGCUCAUGUA   1
  ||||--------||||*==|||||||||||||
targets:1495   AAAGGCGAGCUUUUACUGGUUUCCGAGUACAU   1526

3.0 Arabidopsis thaliana Concanavalin A-like lectin protein kinase family protein mRNA Concanavalin A-like lectin protein kinase family protein(AT3G45430) coding protein psRNATarget