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BaseInfo

ncRNA ID	novel_ath_miR127
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr4:18411735-18411883 [-]
Reference genome	TAIR10
Source	SRR1569251
Length	21
Mature sequence(if miRNA)	1 - UUUUAAGAGAUCAUCAAUAAU - 21
Stem-loop(if miRNA)	--             C   C    C                    ----------          AC       UUUUA   UAUUGAUGGUCUC UAA AUAA UUUUAUGUUAAGAGAUAUGU          CUUAUAACUA  AAAAGUG     A   ||||||||||||| ||| |||| ||||||||||||||||||||          ||||||||||  |||||||     A   AUAACUACUAGAG AUU UGUU AAAAUACAAUUCUCUAUACA          GAAUAUUGAU  UUUUCAU     G UA             A   U    A                    AAAUAUUACC          AU       UCUCU
Stem-loop sequence	UAUUGAUGGUCUCCUAACAUAACUUUUAUGUUAAGAGAUAUGUCUUAUAACUAACAAAAGUGUUUUAAAGUCUCUUACUUUUUAUAGUUAUAAGCCAUUAUAAAACAUAUCUCUUAACAUAAAAAUUGUUUUAAGAGAUCAUCAAUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001344604.1	ncRNA:21   UAAUAACUACUAGAGAAUUUU   1   =*|||*||||||||||||||| targets:1914   GAUAUCGAUGAUCUCUUAAAA   1934 Target Full Sequence	1.0	Arabidopsis thaliana Disease resistance protein (TIR-NBS-LRR class) (RRS1), mRNA	Disease resistance protein (TIR-NBS-LRR class)(RRS1)	coding protein	psRNATarget
NM_001085246.2	ncRNA:21   UAAUAACUACUAGAGAAUUUU   1   =*|||*||||||||||||||| targets:1914   GAUAUCGAUGAUCUCUUAAAA   1934 Target Full Sequence	1.0	Arabidopsis thaliana Disease resistance protein (TIR-NBS-LRR class) (RRS1), mRNA	Disease resistance protein (TIR-NBS-LRR class)(RRS1)	coding protein	psRNATarget
NM_123894.4	ncRNA:21   UAAUAACUACUAGAGAAUUUU   1   =*|||*||||||||||||||| targets:1914   GAUAUCGAUGAUCUCUUAAAA   1934 Target Full Sequence	1.0	Arabidopsis thaliana Disease resistance protein (TIR-NBS-LRR class) (RRS1), mRNA	Disease resistance protein (TIR-NBS-LRR class)(RRS1)	coding protein	psRNATarget
AK117156.1	ncRNA:21   UAAUAACUACUAGAGAAUUUU   1   =*|||*||||||||||||||| targets:1906   GAUAUCGAUGAUCUCUUAAAA   1926 Target Full Sequence	1.0	Arabidopsis thaliana At5g45260 mRNA for putative disease resistance protein, complete cds, clone: RAFL16-69-P09	NA	coding protein	psRNATarget
AK226456.1	ncRNA:21   UAAUAACUACUAGAGAAUUUU   1   =*|||*||||||||||||||| targets:1915   GAUAUCGAUGAUCUCUUAAAA   1935 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for disease resistance like protein, complete cds, clone: RAFL06-15-E06	NA	coding protein	psRNATarget
HQ170631.1	ncRNA:21   UAAUAACUACUAGAGAAUUUU   1   =*|||*||||||||||||||| targets:1840   GAUAUCGAUGAUCUCUUAAAA   1860 Target Full Sequence	1.0	Arabidopsis thaliana RRS1-R mRNA, complete cds	NA	coding protein	psRNATarget
AB470472.1	ncRNA:21   UAAUAACUACUAGAGAAUUUU   1   =*|||*||||||||||||||| targets:1840   GAUAUCGAUGAUCUCUUAAAA   1860 Target Full Sequence	1.0	Arabidopsis thaliana at5g45260 mRNA for putative disease resistance protein, complete cds, ecotype: RLD-0	NA	coding protein	psRNATarget
AB470471.1	ncRNA:21   UAAUAACUACUAGAGAAUUUU   1   =*|||*||||||||||||||| targets:1840   GAUAUCGAUGAUCUCUUAAAA   1860 Target Full Sequence	1.0	Arabidopsis thaliana at5g45260 mRNA for putative disease resistance protein, complete cds, ecotype: Ws-0	NA	coding protein	psRNATarget
JX135561.1	ncRNA:21   UAAUAACUACUAGAGAAUUUU   1   =*|||*||||||||||||||| targets:1840   GAUAUCGAUGAUCUCUUAAAA   1860 Target Full Sequence	1.0	Arabidopsis thaliana ecotype KIL-0 resistance to ralstonia solanacearum 1 mRNA, partial cds	NA	coding protein	psRNATarget
JX135560.1	ncRNA:21   UAAUAACUACUAGAGAAUUUU   1   =*|||*||||||||||||||| targets:1840   GAUAUCGAUGAUCUCUUAAAA   1860 Target Full Sequence	1.0	UNVERIFIED: Arabidopsis thaliana ecotype Be-0 (Bensheim) resistance to ralstonia solanacearum 1-like mRNA, partial sequence	NA	coding protein	psRNATarget
NM_117955.3	ncRNA:21   UAAUAACUACUAGAGAAUUUU   1   *||*|||||||||||||=||| targets:931   UUUUUUGAUGAUCUCUUGAAA   951 Target Full Sequence	2.5	Arabidopsis thaliana transmembrane protein, putative (DUF679) mRNA	transmembrane protein, putative (DUF679)(AT4G18425)	coding protein	psRNATarget