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BaseInfo

ncRNA ID	novel_ath_miR110
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr3:8984569-8984694 [-]
Reference genome	TAIR10
Source	SRR1569249;SRR1569251;SRR1164382
Length	21
Mature sequence(if miRNA)	1 - UUCGAGAAUUUCUGGAAGAGC - 21
Stem-loop(if miRNA)	--       --              C   U  A               UCCUACGAAA     G   UUUUUCA  AGUUUUCGAAGUCC AGA AG AUCUCUUCUACCAAA          GAUCA A   |||||||  |||||||||||||| ||| || |||||||||||||||          |||||   AGAAGGU  UUAAGAGCUUCAGG UCU UC UAGAGAAGGUGGUUU          CUAGU G CG       CU              A   C  A               UUUUUUACUG     A
Stem-loop sequence	UUUUUCAAGUUUUCGAAGUCCCAGAUAGAAUCUCUUCUACCAAAUCCUACGAAAGAUCAGAGAUGAUCGUCAUUUUUUUUUGGUGGAAGAGAUACUCUCUAGGACUUCGAGAAUUUCUGGAAGAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ446642.1	ncRNA:21   CGAGAAGGUCUUUAAGAGCUU   1   ||*|||||||||||||||||| targets:77   GCCCUUCCAGAAAUUCUCGAA   97 Target Full Sequence	1.0	Arabidopsis thaliana clone pENTR221-At3g06895 unknown (At3g06895) mRNA, complete cds	NA	coding protein	psRNATarget
NM_111570.1	ncRNA:21   CGAGAAGGUCUUUAAGAGCUU   1   ||*|||||||||||||||||| targets:77   GCCCUUCCAGAAAUUCUCGAA   97 Target Full Sequence	1.0	Arabidopsis thaliana syntaxin KNOLLE-like protein partial mRNA	syntaxin KNOLLE-like protein(AT3G06895)	coding protein	psRNATarget
NM_103815.5	ncRNA:21   CGAGAAGGUCUUUAAGAGCUU   1   ||*|||||||||||||||||| targets:214   GCCCUUCCAGAAAUUCUCGAA   234 Target Full Sequence	1.0	Arabidopsis thaliana Prefoldin chaperone subunit family protein mRNA	Prefoldin chaperone subunit family protein(AT1G49245)	coding protein	psRNATarget
NM_179316.3	ncRNA:21   CGAGAAGGUCUUUAAGAGCUU   1   *|*|||||||||||||||||| targets:2016   ACCCUUCCAGAAAUUCUCGAA   2036 Target Full Sequence	1.0	Arabidopsis thaliana Seryl-tRNA synthetase (SRS), mRNA	Seryl-tRNA synthetase(SRS)	coding protein	psRNATarget
NM_001203682.1	ncRNA:21   CGAGAAGGUCUUUAAGAGCUU   1   *=*|||||||||||||||||| targets:2091   AUACUUCCAGAAAUUCUCGAA   2111 Target Full Sequence	1.0	Arabidopsis thaliana DNA polymerase delta subunit 1 mRNA	DNA polymerase delta subunit 1(AT5G63960)	coding protein	psRNATarget
DQ160246.1	ncRNA:21   CGAGAAGGUCUUUAAGAGCUU   1   *=*|||||||||||||||||| targets:2040   AUACUUCCAGAAAUUCUCGAA   2060 Target Full Sequence	1.0	Arabidopsis thaliana DNA-directed DNA polymerase delta catalytic subunit (POLD1) mRNA, complete cds	NA	coding protein	psRNATarget
NM_125792.2	ncRNA:21   CGAGAAGGUCUUUAAGAGCUU   1   *=*|||||||||||||||||| targets:2040   AUACUUCCAGAAAUUCUCGAA   2060 Target Full Sequence	1.0	Arabidopsis thaliana DNA polymerase delta subunit 1 mRNA	DNA polymerase delta subunit 1(AT5G63960)	coding protein	psRNATarget
NM_001339010.1	ncRNA:21   CGAGAAGGUCUUUAAGAGCUU   1   *|||||**||||||||||||| targets:189   UCUCUUGAAGAAAUUCUCGAA   209 Target Full Sequence	2.0	Arabidopsis thaliana kxDL motif protein mRNA	kxDL motif protein(AT3G29130)	coding protein	psRNATarget