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BaseInfo

ncRNA ID novel_ath_miR109
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:20863279-20863322 [-]
Reference genome TAIR10
Source SRR1569249
Length 20
Mature sequence(if miRNA) 25 - AUAACAAGAUGUUGGACCCA - 44
Stem-loop(if miRNA) --    C    -U        CA
  AUAA AAGA  GUUGGACC  U
  |||| ||||  ||||||||
  UAUU UUCU  CAGCCUGG  G
AA    -    UU        UU
Stem-loop sequence AUAACAAGAUGUUGGACCCAUGUUGGUCCGACUUUCUUUUAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK228187.1
ncRNA:20   ACCCAGGUUGUAGAACAAUA   1
  ***||||||||||||||||*
targets:1995   AACGUCCAACAUCUUGUUAG   2014

3.0 Arabidopsis thaliana mRNA for putative protein kinase, clone: RAFL14-63-I17 NA coding protein psRNATarget
NM_129475.4
ncRNA:20   ACCCAGGUUGUAGAACAAUA   1
  ***||||||||||||||||*
targets:2099   AACGUCCAACAUCUUGUUAG   2118

3.0 Arabidopsis thaliana CRINKLY4 related 2 (CCR2), mRNA CRINKLY4 related 2(CCR2) coding protein psRNATarget