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BaseInfo

ncRNA ID	novel_ath_miR105
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:13776907-13776977 [-]
Reference genome	TAIR10
Source	SRR1569248;SRR1569251;SRR1986039;SRR1266860;SRR1312897;SRR1312900
Length	24
Mature sequence(if miRNA)	1 - AGAAUGAAGAAGACUCUGAAGCUU - 24
Stem-loop(if miRNA)	--   --            UC   CU  UG     G G   GCU  GGAGUCUUCUUU  UUC  UG  CUCGA U U   |||  ||||||||||||  |||  ||  ||||| |   CGA  UCUCAGAAGAAG  AAG  AC  GAGUU G C UU   AG            -U   --  GU     G U
Stem-loop sequence	GCUGGAGUCUUCUUUUCUUCCUUGUGCUCGAGUGUCUGGUUGAGUGCAGAAUGAAGAAGACUCUGAAGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183194.1	ncRNA:24   UUCGAAGUCUCAGAAGAAGUAAGA   1   |||||||||||*|||||||||||| targets:633   AAGCUUCAGAGCCUUCUUCAUUCU   656 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:24   UUCGAAGUCUCAGAAGAAGUAAGA   1   |||||||||||*|||||||||||* targets:1793   AAGCUUCAGAGCCUUCUUCAUUCC   1816 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:24   UUCGAAGUCUCAGAAGAAGUAAGA   1   |||||||||||*|||||||||||* targets:984   AAGCUUCAGAGCCUUCUUCAUUCC   1007 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183191.1	ncRNA:24   UUCGAAGUCUCAGAAGAAGUAAGA   1   *||||||||||||||||*|||||* targets:1139   UAGCUUCAGAGUCUUCUCCAUUCC   1162 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:24   UUCGAAGUCUCAGAAGAAGUAAGA   1   *||||||||||||||||*|||||* targets:1091   UAGCUUCAGAGUCUUCUCCAUUCC   1114 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:24   UUCGAAGUCUCAGAAGAAGUAAGA   1   *||||||||||||||||*|||||* targets:764   UAGCUUCAGAGUCUUCUCCAUUCC   787 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:24   UUCGAAGUCUCAGAAGAAGUAAGA   1   *||||||||||||||||*|||||* targets:399   CAGCUUCAGAGUCUUCUCCAUUCC   422 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget