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BaseInfo

ncRNA ID	novel_ath_miR101
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:8452578-8452800 [-]
Reference genome	TAIR10
Source	SRR1569248
Length	22
Mature sequence(if miRNA)	202 - AUUUGUAGAUUUAACCUGGGUC - 223
Stem-loop(if miRNA)	--      A        C  GG       A  CCCCUCCUUCCU       U    ----------CAC   UCAUGUUCACAUUGGUUUAUAAUCAUAUUUUUAAUAAUGUACUUACAAAAUC   AUUUGU GAUUUAAC UG  UCAACUG CA            UAGUGGA CCGC             UGA                                                    A   |||||| |||||||| ||  ||||||| ||            ||||||| ||||             |||                                                    A   UAAAUA CUAAAUUG AC  AGUUGAC GU            AUCAUCU GGUG             AAC                                                    C AU      -        -  UA       -  ------------       -    AAAAAGAAGAAAA   CAAAUAUUAGUAUUAUCUGGUGAAUGAAGUUGGUUUUUUUCAAAAACUUCAU
Stem-loop sequence	AUUUGUAGAUUUAACCUGGGUCAACUGACACCCCUCCUUCCUUAGUGGAUCCGCCACUGAUCAUGUUCACAUUGGUUUAUAAUCAUAUUUUUAAUAAUGUACUUACAAAAUCAACUACUUCAAAAACUUUUUUUGGUUGAAGUAAGUGGUCUAUUAUGAUUAUAAACCAAAAAAGAAGAAAAAGUGGUCUACUAUGCAGUUGAAUCAGUUAAAUCAUAAAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY133787.1	ncRNA:22   CUGGGUCCAAUUUAGAUGUUUA   1   |*||||*|||||||||||*||| targets:232   GUCCCAUGUUAAAUCUACCAAU   253 Target Full Sequence	2.5	Arabidopsis thaliana clone U11912 putative antifungal protein PDF1.2 (At5g44420) mRNA, complete cds	NA	coding protein	psRNATarget
AY063779.1	ncRNA:22   CUGGGUCCAAUUUAGAUGUUUA   1   |*||||*|||||||||||*||| targets:280   GUCCCAUGUUAAAUCUACCAAU   301 Target Full Sequence	2.5	Arabidopsis thaliana putative antifungal protein PDF1.2 (At5g44420) mRNA, complete cds	NA	coding protein	psRNATarget
NM_123809.4	ncRNA:22   CUGGGUCCAAUUUAGAUGUUUA   1   |*||||*|||||||||||*||| targets:320   GUCCCAUGUUAAAUCUACCAAU   341 Target Full Sequence	2.5	Arabidopsis thaliana plant defensin 1.2 (PDF1.2), mRNA	plant defensin 1.2(PDF1.2)	coding protein	psRNATarget