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BaseInfo

ncRNA ID novel_ath_miR98
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:13506454-13506560 [-]
Reference genome TAIR10
Source SRR1560129
Length 21
Mature sequence(if miRNA) 1 - UUCUUGUUUCGGUCUUUAGAC - 21
Stem-loop(if miRNA) --  UU          UU     UG     U     --UUC  AGUACCCACGGC
  CU  AGACUGAAAC  GAGAC  AACAU GAUCC     UU            U
  ||  ||||||||||  |||||  ||||| |||||     ||
  GA  UCUGGCUUUG  CUUUG  UUGUA CUAGG     AG            U
CA  UU          UU     GU     -     UCUAC  ACACACUAAAAU
Stem-loop sequence CUUUAGACUGAAACUUGAGACUGAACAUUGAUCCUUCUUAGUACCCACGGCUUUAAAAUCACACAGACAUCUGGAUCAUGUUUGGUUUCUUGUUUCGGUCUUUAGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001342074.1
ncRNA:21   CAGAUUUCUGGCUUUGUUCUU   1
  ||||||||||=||||||||||
targets:646   GUCUAAAGACUGAAACAAGAA   666

1.5 Arabidopsis thaliana hypothetical protein mRNA hypothetical protein(AT4G31355) coding protein psRNATarget
NM_129480.3
ncRNA:21   CAGAUUUCUGGCUUUGUUCUU   1
  ***|||||||*||||||||||
targets:336   AAAUAAAGACAGAAACAAGAA   356

2.5 Arabidopsis thaliana PATATIN-like protein 6 (PLP6), mRNA PATATIN-like protein 6(PLP6) coding protein psRNATarget