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BaseInfo

ncRNA ID novel_ath_miR93
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:2674969-2675036 [+]
Reference genome TAIR10
Source SRR1560128
Length 24
Mature sequence(if miRNA) 1 - UCGGAUUGUUAGCGAGAAGGCACC - 24
Stem-loop(if miRNA) --       G U  C        AC UU    AA
  UCGGAUU U AG GAGAAGGC  C  UUGA  A
  ||||||| | || ||||||||  |  ||||  A
  AGCCUGG G UC CUCUUCCG  G  AGCU  U
UU       G U  -        GC UU    GG
Stem-loop sequence UCGGAUUGUUAGCGAGAAGGCACCUUUUGAAAAAUGGUCGAUUGCGGCCUUCUCCUUGGGGUCCGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY464651.1
ncRNA:24   CCACGGAAGAGCGAUUGUUAGGCU   1
  ||||||||||||||||||||||||
targets:419   GGUGCCUUCUCGCUAACAAUCCGA   442

0.0 Arabidopsis thaliana At2g16170 mRNA, partial sequence NA coding protein psRNATarget
AY227640.1
ncRNA:24   CCACGGAAGAGCGAUUGUUAGGCU   1
  ||||||||||||||||||||=|||
targets:770   GGUGCCUUCUCGCUAACAAUUCGA   793

1.5 Arabidopsis thaliana hypothetical protein (At2g05460/T20G20.19) mRNA, complete cds NA coding protein psRNATarget