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BaseInfo

ncRNA ID novel_ath_miR88
Species Arabidopsis thaliana
Class miRNA
Genome position Chr4:11209070-11209255 [+]
Reference genome TAIR10
Source SRR1560128
Length 23
Mature sequence(if miRNA) 1 - CGAAACCAAAGUUGUCGAAACUA - 23
Stem-loop(if miRNA) --     C   -    G    -    A   A  C     --AA    UGC    GGG      G  UUAA  - GU   -C        C   -    G
  CGAAA CAA AGUU UCGA AACU UUG UU CGUCG    GCGG   GAGC   GAGCUC GC    UC U  CGU  CGACGAAA CAA AGUU U
  ||||| ||| |||| |||| |||| ||| || |||||    ||||   ||||   |||||| ||    || |  |||  |||||||| ||| |||| C
  GCUUU GUU UCAA AGCU UUGA AAC AA GCAGC    UGUC   UUCG   CUCGAG CG    AG G  GCG  GCUGCUUU GUU UCAA G
CU     A   A    -    G    -   C  A     CUGC    UAA    --G      G  --CG  C UG   AA        A   A    A
Stem-loop sequence CGAAACCAAAGUUGUCGAAACUAUUGAUUCCGUCGAAGCGGUGCGAGCGGGGAGCUCGGCUUAAUCUGUCGUCCGACGAAACCAAAGUUGUCGAAACUAUUGAUUUCGUCGAAGCGGUGCGAGCGCGGAGCUCGGCUUAAUCUGUCGUCCGACGAAACCAAAGUUGUCGAAACUAUUGAUUUCGUC