ncRNA ID | novel_ath_miR88 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr4:11209070-11209255 [+] |
Reference genome | TAIR10 |
Source | SRR1560128 |
Length | 23 |
Mature sequence(if miRNA) | 1 - CGAAACCAAAGUUGUCGAAACUA - 23 |
Stem-loop(if miRNA) |
--     C   -    G    -    A   A  C     --AA    UGC    GGG      G  UUAA  - GU   -C        C   -    G   CGAAA CAA AGUU UCGA AACU UUG UU CGUCG    GCGG   GAGC   GAGCUC GC    UC U  CGU  CGACGAAA CAA AGUU U   ||||| ||| |||| |||| |||| ||| || |||||    ||||   ||||   |||||| ||    || |  |||  |||||||| ||| |||| C   GCUUU GUU UCAA AGCU UUGA AAC AA GCAGC    UGUC   UUCG   CUCGAG CG    AG G  GCG  GCUGCUUU GUU UCAA G CU     A   A    -    G    -   C  A     CUGC    UAA    --G      G  --CG  C UG   AA        A   A    A |
Stem-loop sequence | CGAAACCAAAGUUGUCGAAACUAUUGAUUCCGUCGAAGCGGUGCGAGCGGGGAGCUCGGCUUAAUCUGUCGUCCGACGAAACCAAAGUUGUCGAAACUAUUGAUUUCGUCGAAGCGGUGCGAGCGCGGAGCUCGGCUUAAUCUGUCGUCCGACGAAACCAAAGUUGUCGAAACUAUUGAUUUCGUC |