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BaseInfo

ncRNA ID novel_ath_miR85
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:6242873-6242955 [-]
Reference genome TAIR10
Source SRR1560128
Length 22
Mature sequence(if miRNA) 1 - UCCGAUAUCGGAUCACCUAAAG - 22
Stem-loop(if miRNA) --    A      -   G          U  AAU      UU
  UUAG UGAUCC AUA UGGAUACGAA GC   GAGAUC  G
  |||| |||||| ||| |||||||||| ||   ||||||
  AAUC ACUAGG UAU GCCUAUGCUU CG   CUCUAG  U
GA    C      C   A          C  CUU      UA
Stem-loop sequence UUAGAUGAUCCAUAGUGGAUACGAAUGCAAUGAGAUCUUGUAUGAUCUCUUCGCCUUCGUAUCCGAUAUCGGAUCACCUAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_112705.4
ncRNA:22   GAAAUCCACUAGGCUAUAGCCU   1
  ||||||||||||||||||||||
targets:1451   CUUUAGGUGAUCCGAUAUCGGA   1472

0.0 Arabidopsis thaliana transmembrane protein, putative (Protein of unknown function, DUF599) mRNA transmembrane protein, putative (Protein of unknown function, DUF599)(AT3G18215) coding protein psRNATarget
NM_001338331.1
ncRNA:22   GAAAUCCACUAGGCUAUAGCCU   1
  ||||||||||||||||||||||
targets:1855   CUUUAGGUGAUCCGAUAUCGGA   1876

0.0 Arabidopsis thaliana transmembrane protein, putative (Protein of unknown function, DUF599) mRNA transmembrane protein, putative (Protein of unknown function, DUF599)(AT3G18215) coding protein psRNATarget