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BaseInfo

ncRNA ID novel_ath_miR70
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:6242451-6242511 [+]
Reference genome TAIR10
Source SRR1560124
Length 21
Mature sequence(if miRNA) 41 - AAGAUGAAAACGCAAACGCCU - 61
Stem-loop(if miRNA) --                G  AC    AUU
  GCGUUUGUGUUUUCAU UU  AAUG   A
  |||||||||||||||| ||  ||||   G
  CGCAAACGCAAAAGUA AA  UUAC   A
UC                G  CA    AAA
Stem-loop sequence GCGUUUGUGUUUUCAUGUUACAAUGAUUAGAAAACAUUACAAGAUGAAAACGCAAACGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001343391.1
ncRNA:21   UCCGCAAACGCAAAAGUAGAA   1
  **||||||||||||||||*|*
targets:305   CUGCGUUUGCGUUUUCAUAUA   325

2.5 Arabidopsis thaliana Transmembrane amino acid transporter family protein mRNA Transmembrane amino acid transporter family protein(AT5G15240) coding protein psRNATarget
BX813978.1
ncRNA:21   UCCGCAAACGCAAAAGUAGAA   1
  ***=*||||||||||||||||
targets:654   UAUUCUUUGCGUUUUCAUCUU   674

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB50ZE08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget