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BaseInfo

ncRNA ID	novel_ath_miR65
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:10445474-10445556 [-]
Reference genome	TAIR10
Source	SRR1560124;SRR1842775;SRR3144592;SRR3178439;SRR3178442;SRR3178443;SRR3178444;SRR3178445;SRR3707795;SRR3707799
Length	20
Mature sequence(if miRNA)	64 - AUAAGUCAAGUAGUAGUCCU - 83
Stem-loop(if miRNA)	--             U    CU           UAAGUUAAG   AUAAGUCAAGUAG AGUC  UGUUUGUCAUC         A   ||||||||||||| ||||  |||||||||||   UAUUCGGUUCAUC UCGG  ACAAACAGUAG         A CG             U    -U           UAUAUCCUG
Stem-loop sequence	AUAAGUCAAGUAGUAGUCCUUGUUUGUCAUCUAAGUUAAGAAGUCCUAUAUGAUGACAAACAUGGCUUCUACUUGGCUUAUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001160911.1	ncRNA:20   UCCUGAUGAUGAACUGAAUA   1   |||||||||||||||||||| targets:2117   AGGACUACUACUUGACUUAU   2136 Target Full Sequence	0.0	Arabidopsis thaliana Magnesium transporter CorA-like family protein partial mRNA	Magnesium transporter CorA-like family protein(AT1G29830)	coding protein	psRNATarget
NM_001123913.1	ncRNA:20   UCCUGAUGAUGAACUGAAUA   1   |||||||||||||||||||| targets:2127   AGGACUACUACUUGACUUAU   2146 Target Full Sequence	0.0	Arabidopsis thaliana Magnesium transporter CorA-like family protein mRNA	Magnesium transporter CorA-like family protein(AT1G29830)	coding protein	psRNATarget
NM_102723.3	ncRNA:20   UCCUGAUGAUGAACUGAAUA   1   |||||||||||||||||||| targets:2219   AGGACUACUACUUGACUUAU   2238 Target Full Sequence	0.0	Arabidopsis thaliana Magnesium transporter CorA-like family protein mRNA	Magnesium transporter CorA-like family protein(AT1G29830)	coding protein	psRNATarget
DQ132670.1	ncRNA:20   UCCUGAUGAUGAACUGAAUA   1   |||||||||||||||||||| targets:2204   AGGACUACUACUUGACUUAU   2223 Target Full Sequence	0.0	Arabidopsis thaliana clone 01251 hypothetical protein (At1g29830) mRNA, complete cds	NA	coding protein	psRNATarget
DQ132671.1	ncRNA:20   UCCUGAUGAUGAACUGAAUA   1   |||||||||||||||||||| targets:2218   AGGACUACUACUUGACUUAU   2237 Target Full Sequence	0.0	Arabidopsis thaliana clone 01252 hypothetical protein (At1g29830) mRNA, complete cds	NA	coding protein	psRNATarget
KJ138744.1	ncRNA:20   UCCUGAUGAUGAACUGAAUA   1   |*||*||||||||||||||* targets:1577   ACGAGUACUACUUGACUUAC   1596 Target Full Sequence	3.0	Arabidopsis thaliana glycosyltransferase (AT4G19900) mRNA, partial cds	NA	coding protein	psRNATarget
NM_001341377.1	ncRNA:20   UCCUGAUGAUGAACUGAAUA   1   |*||*||||||||||||||* targets:1727   ACGAGUACUACUUGACUUAC   1746 Target Full Sequence	3.0	Arabidopsis thaliana alpha 1,4-glycosyltransferase family protein mRNA	alpha 1,4-glycosyltransferase family protein(AT4G19900)	coding protein	psRNATarget
NM_118109.3	ncRNA:20   UCCUGAUGAUGAACUGAAUA   1   |*||*||||||||||||||* targets:1762   ACGAGUACUACUUGACUUAC   1781 Target Full Sequence	3.0	Arabidopsis thaliana alpha 1,4-glycosyltransferase family protein mRNA	alpha 1,4-glycosyltransferase family protein(AT4G19900)	coding protein	psRNATarget