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BaseInfo

ncRNA ID	novel_ath_miR42
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr4:18511378-18511465 [+]
Reference genome	TAIR10
Source	SRR1560122;SRR1560128;SRR1569250;SRR2145250
Length	21
Mature sequence(if miRNA)	68 - CAUUAAGAACAAUUGGGCUGA - 88
Stem-loop(if miRNA)	--         U                    A UU   AUUUA   AGCCCAAUU UUCUUAAUGGGUCGUAUCAG C  UAU     U   ||||||||| |||||||||||||||||||| |  |||   UCGGGUUAA AAGAAUUACCCGGCAUAGUC G  AUA     U AG         C                    A UC   CUACC
Stem-loop sequence	AGCCCAAUUUUUCUUAAUGGGUCGUAUCAGACUUUAUAUUUAUUCCAUCAUACUGACUGAUACGGCCCAUUAAGAACAAUUGGGCUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK227016.1	ncRNA:21   AGUCGGGUUAACAAGAAUUAC   1   *=|||*||||||||||||||* targets:27   AUAGCACAAUUGUUCUUAAUC   47 Target Full Sequence	2.0	Arabidopsis thaliana mRNA for telomeric DNA-binding protein 1, complete cds, clone: RAFL09-45-N14	NA	coding protein	psRNATarget
AY029195.1	ncRNA:21   AGUCGGGUUAACAAGAAUUAC   1   *=|||*||||||||||||||* targets:145   AUAGCACAAUUGUUCUUAAUC   165 Target Full Sequence	2.0	Arabidopsis thaliana telomeric DNA binding protein 1 (TBP1) mRNA, complete cds	NA	coding protein	psRNATarget
AF072536.1	ncRNA:21   AGUCGGGUUAACAAGAAUUAC   1   *=|||*||||||||||||||* targets:168   AUAGCACAAUUGUUCUUAAUC   188 Target Full Sequence	2.0	Arabidopsis thaliana H-protein promoter binding factor-1 (HPPBF-1) mRNA, complete cds	NA	coding protein	psRNATarget
BX832368.1	ncRNA:21   AGUCGGGUUAACAAGAAUUAC   1   *=|||*||||||||||||||* targets:158   AUAGCACAAUUGUUCUUAAUC   178 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH68ZD06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_121385.5	ncRNA:21   AGUCGGGUUAACAAGAAUUAC   1   *=|||*||||||||||||||* targets:220   AUAGCACAAUUGUUCUUAAUC   240 Target Full Sequence	2.0	Arabidopsis thaliana telomeric DNA binding protein 1 (TBP1), mRNA	telomeric DNA binding protein 1(TBP1)	coding protein	psRNATarget