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BaseInfo

ncRNA ID	novel_ath_miR40
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr3:6217454-6217625 [+]
Reference genome	TAIR10
Source	SRR1560121;SRR1560122;SRR1560124;SRR1560125;SRR1266863
Length	21
Mature sequence(if miRNA)	152 - AUUCCUAACAAGUUUGGCAAG - 172
Stem-loop(if miRNA)	--     UU           C    U   --         U        G  UU       C               --        A   UGCCA  UUUGUUAGGAA UGGA CUG  GUAUUUUGC CAAGUAUG UU  CUUGGCC AUCCACUUCUAAUGU  GUUUUGUA C   |||||  ||||||||||| |||| |||  ||||||||| |||||||| ||  ||||||| |||||||||||||||  |||||||| U   ACGGU  GAACAAUCCUU ACCU GAC  CGUAAAACG GUUCAUGC AA  GAACUGG UAGGUGAAGAUUACG  UAAAACGU A GA     UU           A    -   GG         U        G  GG       U               UG        A
Stem-loop sequence	UGCCAUUUUUGUUAGGAACUGGAUCUGGUAUUUUGCUCAAGUAUGGUUUUCUUGGCCCAUCCACUUCUAAUGUGUUUUGUAACUAAUGCAAAAUGUGCAUUAGAAGUGGAUUGGUCAAGGGAAGCGUACUUGUGCAAAAUGCGGCAGUCCAAUUCCUAACAAGUUUGGCAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY143964.1	ncRNA:21   GAACGGUUUGAACAAUCCUUA   1   **||=|||||||||||*|||| targets:7   AAUGUCAAACUUGUUAAGAAU   27 Target Full Sequence	2.5	Arabidopsis thaliana At5g13180/T19L5_140 mRNA, complete cds	NA	coding protein	psRNATarget
AF385734.1	ncRNA:21   GAACGGUUUGAACAAUCCUUA   1   **||=|||||||||||*|||| targets:74   AAUGUCAAACUUGUUAAGAAU   94 Target Full Sequence	2.5	Arabidopsis thaliana AT5g13180/T19L5_140 mRNA, complete cds	NA	coding protein	psRNATarget
BX831715.1	ncRNA:21   GAACGGUUUGAACAAUCCUUA   1   **||=|||||||||||*|||| targets:53   AAUGUCAAACUUGUUAAGAAU   73 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH25ZD08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_121321.4	ncRNA:21   GAACGGUUUGAACAAUCCUUA   1   **||=|||||||||||*|||| targets:394   AAUGUCAAACUUGUUAAGAAU   414 Target Full Sequence	2.5	Arabidopsis thaliana NAC domain containing protein 83 (NAC083), mRNA	NAC domain containing protein 83(NAC083)	coding protein	psRNATarget
AK175667.1	ncRNA:21   GAACGGUUUGAACAAUCCUUA   1   *||||*|||||||*||||||| targets:1845   AUUGCAAAACUUGGUAGGAAU   1865 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for protein phosphatase 2A regulatory subunit B'-like protein, complete cds, clone: RAFL22-15-N06	NA	coding protein	psRNATarget
NM_115350.3	ncRNA:21   GAACGGUUUGAACAAUCCUUA   1   *||||*|||||||*||||||| targets:1932   AUUGCAAAACUUGGUAGGAAU   1952 Target Full Sequence	2.5	Arabidopsis thaliana Protein phosphatase 2A regulatory B subunit family protein mRNA	Protein phosphatase 2A regulatory B subunit family protein(AT3G54930)	coding protein	psRNATarget
NM_001339705.1	ncRNA:21   GAACGGUUUGAACAAUCCUUA   1   *||||*|||||||*||||||| targets:1971   AUUGCAAAACUUGGUAGGAAU   1991 Target Full Sequence	2.5	Arabidopsis thaliana Protein phosphatase 2A regulatory B subunit family protein mRNA	Protein phosphatase 2A regulatory B subunit family protein(AT3G54930)	coding protein	psRNATarget
NM_001339704.1	ncRNA:21   GAACGGUUUGAACAAUCCUUA   1   *||||*|||||||*||||||| targets:1993   AUUGCAAAACUUGGUAGGAAU   2013 Target Full Sequence	2.5	Arabidopsis thaliana Protein phosphatase 2A regulatory B subunit family protein mRNA	Protein phosphatase 2A regulatory B subunit family protein(AT3G54930)	coding protein	psRNATarget