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BaseInfo

ncRNA ID	novel_ath_miR38
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr2:18108352-18108435 [+]
Reference genome	TAIR10
Source	SRR1560121
Length	21
Mature sequence(if miRNA)	64 - UCUGCCUGCUUCUUUUUCCUC - 84
Stem-loop(if miRNA)	--     C     A   A         A      -    ACCA   GGAAG AGAGG UAG CAGAGAGAA AGGGAA AAUU    G   ||||| ||||| ||| ||||||||| |||||| ||||   CCUUU UCUUC GUC GUCUCUCUU UUUCUU UUGA    A CU     U     -   C         C      C    GAAC
Stem-loop sequence	GGAAGCAGAGGAUAGACAGAGAGAAAAGGGAAAAUUACCAGACAAGAGUUCUUCUUUCUUCUCUCUGCCUGCUUCUUUUUCCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_128818.3	ncRNA:21   CUCCUUUUUCUUCGUCCGUCU   1   *||||||||||||||*||||| targets:1444   CAGGAAAAAGAAGCAAGCAGA   1464 Target Full Sequence	1.5	Arabidopsis thaliana condensin complex subunit (EMB2795), mRNA	condensin complex subunit(EMB2795)	coding protein	psRNATarget
AB193292.1	ncRNA:21   CUCCUUUUUCUUCGUCCGUCU   1   *||||||||||||||*||||| targets:1311   CAGGAAAAAGAAGCAAGCAGA   1331 Target Full Sequence	1.5	Arabidopsis thaliana AtCAP-H mRNA forchromosome associate protein subunit H, complete cds	NA	coding protein	psRNATarget
NM_118885.4	ncRNA:21   CUCCUUUUUCUUCGUCCGUCU   1   *|||||=|||||||*|||||| targets:1750   AAGGAAGAAGAAGCUGGCAGA   1770 Target Full Sequence	2.5	Arabidopsis thaliana proton pump interactor 1 (PPI1), mRNA	proton pump interactor 1(PPI1)	coding protein	psRNATarget
AY050365.1	ncRNA:21   CUCCUUUUUCUUCGUCCGUCU   1   *|||||=|||||||*|||||| targets:1589   AAGGAAGAAGAAGCUGGCAGA   1609 Target Full Sequence	2.5	Arabidopsis thaliana AT4g27500/F27G19_100 mRNA, complete cds	NA	coding protein	psRNATarget
AJ002020.2	ncRNA:21   CUCCUUUUUCUUCGUCCGUCU   1   *|||||=|||||||*|||||| targets:1569   AAGGAAGAAGAAGCUGGCAGA   1589 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for proton pump interactor, partial	NA	coding protein	psRNATarget
AY143914.1	ncRNA:21   CUCCUUUUUCUUCGUCCGUCU   1   *|||||=|||||||*|||||| targets:1464   AAGGAAGAAGAAGCUGGCAGA   1484 Target Full Sequence	2.5	Arabidopsis thaliana At4g27500/F27G19_100 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001341859.1	ncRNA:21   CUCCUUUUUCUUCGUCCGUCU   1   *|||||=|||||||*|||||| targets:1660   AAGGAAGAAGAAGCUGGCAGA   1680 Target Full Sequence	2.5	Arabidopsis thaliana proton pump interactor 1 (PPI1), partial mRNA	proton pump interactor 1(PPI1)	coding protein	psRNATarget
AK316706.1	ncRNA:21   CUCCUUUUUCUUCGUCCGUCU   1   *|||||=|||||||*|||||| targets:1503   AAGGAAGAAGAAGCUGGCAGA   1523 Target Full Sequence	2.5	Arabidopsis thaliana AT4G27500 mRNA, partial cds, clone: RAFL07-07-H11	NA	coding protein	psRNATarget
AK220843.1	ncRNA:21   CUCCUUUUUCUUCGUCCGUCU   1   *|||||=|||||||*|||||| targets:42   AAGGAAGAAGAAGCUGGCAGA   62 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-38-F07	NA	coding protein	psRNATarget
BX829254.1	ncRNA:21   CUCCUUUUUCUUCGUCCGUCU   1   *|||||=|||||||*|||||| targets:6   AAGGAAGAAGAAGCUGGCAGA   26 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZE04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget