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BaseInfo

ncRNA ID	novel_ath_miR33
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr4:18411734-18411884 [-]
Reference genome	TAIR10
Source	SRR1560121
Length	24
Mature sequence(if miRNA)	1 - UGUUUUAAGAGAUCAUCAAUAAUG - 24
Stem-loop(if miRNA)	--              C   C    C                    ----------          AC       UUUUA   UUAUUGAUGGUCUC UAA AUAA UUUUAUGUUAAGAGAUAUGU          CUUAUAACUA  AAAAGUG     A   |||||||||||||| ||| |||| ||||||||||||||||||||          ||||||||||  |||||||     A   AAUAACUACUAGAG AUU UGUU AAAAUACAAUUCUCUAUACA          GAAUAUUGAU  UUUUCAU     G GU              A   U    A                    AAAUAUUACC          AU       UCUCU
Stem-loop sequence	UUAUUGAUGGUCUCCUAACAUAACUUUUAUGUUAAGAGAUAUGUCUUAUAACUAACAAAAGUGUUUUAAAGUCUCUUACUUUUUAUAGUUAUAAGCCAUUAUAAAACAUAUCUCUUAACAUAAAAAUUGUUUUAAGAGAUCAUCAAUAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AB029820.1	ncRNA:24   GUAAUAACUACUAGAGAAUUUUGU   1   ||||||||||*=|||||||||||| targets:433   CAUUAUUGAUAGUCUCUUAAAACA   456 Target Full Sequence	2.5	Arabidopsis thaliana AtPSK3 mRNA for phytosulfokine precursor 3, complete cds	NA	coding protein	psRNATarget
NM_114838.2	ncRNA:24   GUAAUAACUACUAGAGAAUUUUGU   1   |*||||||||*=|||||||||||| targets:822   CCUUAUUGAUAGUCUCUUAAAACA   845 Target Full Sequence	2.5	Arabidopsis thaliana phytosulfokine 4 precursor (PSK4), mRNA	phytosulfokine 4 precursor(PSK4)	coding protein	psRNATarget
BT001985.1	ncRNA:24   GUAAUAACUACUAGAGAAUUUUGU   1   |*||||||||*=|||||||||||| targets:461   CCUUAUUGAUAGUCUCUUAAAACA   484 Target Full Sequence	2.5	Arabidopsis thaliana putative protein (At3g49780) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103143.4	ncRNA:24   GUAA-------UAACUACUAGAGAAUUUUGU   1   ||||-------|*|||||||=|||||||||| targets:625   CAUUUGCUGCGAGUGAUGAUUUCUUAAAACA   655 Target Full Sequence	2.5	Arabidopsis thaliana Glyceraldehyde-3-phosphate dehydrogenase-like family protein mRNA	Glyceraldehyde-3-phosphate dehydrogenase-like family protein(AT1G34200)	coding protein	psRNATarget
AF367333.1	ncRNA:24   GUAA-------UAACUACUAGAGAAUUUUGU   1   ||||-------|*|||||||=|||||||||| targets:569   CAUUUGCUGCGAGUGAUGAUUUCUUAAAACA   599 Target Full Sequence	2.5	Arabidopsis thaliana F23M19.12/F23M19.12 mRNA, complete cds	NA	coding protein	psRNATarget
AK319024.2	ncRNA:24   GUAA-------UAACUACUAGAGAAUUUUGU   1   ||||-------|*|||||||=|||||||||| targets:441   CAUUUGCUGCGAGUGAUGAUUUCUUAAAACA   471 Target Full Sequence	2.5	Arabidopsis thaliana AT1G34200 mRNA, complete cds, clone: RAFL24-14-I07	NA	coding protein	psRNATarget
BX816353.1	ncRNA:24   GUAA-------UAACUACUAGAGAAUUUUGU   1   ||||-------|*|||||||=|||||||||| targets:504   CAUUUGCUGCGAGUGAUGAUUUCUUAAAACA   534 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH42ZH05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY133555.1	ncRNA:24   GUAA-------UAACUACUAGAGAAUUUUGU   1   ||||-------|*|||||||=|||||||||| targets:485   CAUUUGCUGCGAGUGAUGAUUUCUUAAAACA   515 Target Full Sequence	2.5	Arabidopsis thaliana At1g34200/F23M19.12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_105305.4	ncRNA:24   GUAAUAACUACUAGAGAAUUUUGU   1   |=||*|*||||||*|||||||||| targets:2502   CGUUUUGGAUGAUAUCUUAAAACA   2525 Target Full Sequence	2.5	Arabidopsis thaliana Signal transduction histidine kinase, hybrid-type, ethylene sensor (ETR1), mRNA	Signal transduction histidine kinase, hybrid-type, ethylene sensor(ETR1)	coding protein	psRNATarget
AK227292.1	ncRNA:24   GUAAUAACUACUAGAGAAUUUUGU   1   |=||*|*||||||*|||||||||| targets:2501   CGUUUUGGAUGAUAUCUUAAAACA   2524 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for ethylene-response protein, clone: RAFL11-12-L21	NA	coding protein	psRNATarget