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BaseInfo

ncRNA ID	novel_ath_miR27
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:10445471-10445559 [-]
Reference genome	TAIR10
Source	SRR1560120;SRR1560121;SRR1560122;SRR1560123;SRR1569249;SRR2721746;SRR1262545;SRR1262546;SRR1262601
Length	23
Mature sequence(if miRNA)	67 - CGCAUAAGUCAAGUAGUAGUCCU - 89
Stem-loop(if miRNA)	--                U    CU           UAAGUUAAG   CGCAUAAGUCAAGUAG AGUC  UGUUUGUCAUC         A   |||||||||||||||| ||||  |||||||||||   GCGUAUUCGGUUCAUC UCGG  ACAAACAGUAG         A UA                U    -U           UAUAUCCUG
Stem-loop sequence	CGCAUAAGUCAAGUAGUAGUCCUUGUUUGUCAUCUAAGUUAAGAAGUCCUAUAUGAUGACAAACAUGGCUUCUACUUGGCUUAUGCGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001160911.1	ncRNA:23   UCCUGAUGAUGAACUGAAUACGC   1   ||||||||||||||||||||||| targets:2117   AGGACUACUACUUGACUUAUGCG   2139 Target Full Sequence	0.0	Arabidopsis thaliana Magnesium transporter CorA-like family protein partial mRNA	Magnesium transporter CorA-like family protein(AT1G29830)	coding protein	psRNATarget
NM_001123913.1	ncRNA:23   UCCUGAUGAUGAACUGAAUACGC   1   ||||||||||||||||||||||| targets:2127   AGGACUACUACUUGACUUAUGCG   2149 Target Full Sequence	0.0	Arabidopsis thaliana Magnesium transporter CorA-like family protein mRNA	Magnesium transporter CorA-like family protein(AT1G29830)	coding protein	psRNATarget
NM_102723.3	ncRNA:23   UCCUGAUGAUGAACUGAAUACGC   1   ||||||||||||||||||||||| targets:2219   AGGACUACUACUUGACUUAUGCG   2241 Target Full Sequence	0.0	Arabidopsis thaliana Magnesium transporter CorA-like family protein mRNA	Magnesium transporter CorA-like family protein(AT1G29830)	coding protein	psRNATarget
DQ132670.1	ncRNA:23   UCCUGAUGAUGAACUGAAUACGC   1   ||||||||||||||||||||||| targets:2204   AGGACUACUACUUGACUUAUGCG   2226 Target Full Sequence	0.0	Arabidopsis thaliana clone 01251 hypothetical protein (At1g29830) mRNA, complete cds	NA	coding protein	psRNATarget
DQ132671.1	ncRNA:23   UCCUGAUGAUGAACUGAAUACGC   1   ||||||||||||||||||||||| targets:2218   AGGACUACUACUUGACUUAUGCG   2240 Target Full Sequence	0.0	Arabidopsis thaliana clone 01252 hypothetical protein (At1g29830) mRNA, complete cds	NA	coding protein	psRNATarget
BX821338.1	ncRNA:23   UCCUGAUGAUGAACUGAAUACGC   1   =***=||=||||||||||||||* targets:466   GUUUUUAUUACUUGACUUAUGCU   488 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL34ZG04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX821405.1	ncRNA:23   UCCUGAUGAUGAACUGAAUACGC   1   =***=||=||||||||||||||* targets:478   GUUUUUAUUACUUGACUUAUGCU   500 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL39ZF12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT003966.1	ncRNA:23   UCCUGAUGAUGAACUGAAUACGC   1   =***=||=||||||||||||||* targets:463   GUUUUUAUUACUUGACUUAUGCU   485 Target Full Sequence	3.0	Arabidopsis thaliana clone RAFL15-26-O05 (R20825) unknown protein (At2g19350) mRNA, complete cds	NA	coding protein	psRNATarget
AY087699.1	ncRNA:23   UCCUGAUGAUGAACUGAAUACGC   1   =***=||=||||||||||||||* targets:491   GUUUUUAUUACUUGACUUAUGCU   513 Target Full Sequence	3.0	Arabidopsis thaliana clone 37787 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_127492.3	ncRNA:23   UCCUGAUGAUGAACUGAAUACGC   1   =***=||=||||||||||||||* targets:538   GUUUUUAUUACUUGACUUAUGCU   560 Target Full Sequence	3.0	Arabidopsis thaliana transmembrane protein (DUF872) mRNA	transmembrane protein (DUF872)(AT2G19350)	coding protein	psRNATarget