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BaseInfo

ncRNA ID novel_ath_miR25
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:27022139-27022230 [-]
Reference genome TAIR10
Source SRR1560120
Length 20
Mature sequence(if miRNA) 1 - UUUGUGUAUUCUAACGACGU - 20
Stem-loop(if miRNA) --      UGU                       -----------     A
  GUCGUU   AUACACAAAAGUGAAACGGCGUC           AUGUG G
  ||||||   |||||||||||||||||||||||           ||||| U
  CAGCAA   UAUGUGUUUUCGCUUUGUCGCAG           UACGC A
UG      UCU                       CAAAUAAAUAU     G
Stem-loop sequence GUCGUUUGUAUACACAAAAGUGAAACGGCGUCAUGUGAGUAGCGCAUUAUAAAUAAACGACGCUGUUUCGCUUUUGUGUAUUCUAACGACGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_105842.3
ncRNA:20   UGCAGCAAUCUUAUGUGUUU   1
  ||||||||||||||||||||
targets:4   ACGUCGUUAGAAUACACAAA   23

0.0 Arabidopsis thaliana transducin family protein / WD-40 repeat family protein mRNA transducin family protein / WD-40 repeat family protein(AT1G71840) coding protein psRNATarget