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BaseInfo

ncRNA ID	ath-miRf10438-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UAGGAUCAAGAUGGGGAUGA - NA
Stem-loop(if miRNA)	UUAC        UGAG        C  U   --     AUUAG    -   ---AG  ACUC GUUC    UCAUUCCC    UUGAUCCU AU GGU  UGGAA     CAGG UGC     GG    C ||||    ||||||||    |||||||| || |||  |||||     |||| |||     || CGAG    AGUAGGGG    AACUAGGA UA UCG  ACCUU     GUUC ACG     CC    A     UUCC        -UAG        -  C   AC     --ACA    G   GUACA  AAUU
Stem-loop sequence	GUUCUUACUCAUUCCCUGAGUUGAUCCUCAUUGGUUGGAAAUUAGCAGGUGCAGGGACUCCAUUAACCACAUGGCAGCUUGACAUUCCACAGCUCAUAGGAUCAAGAUGGGGAUGACCUUGAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001337190.1	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||||||||||||||||| targets:1759   UCAUCCCCAUCUUGAUCCUA   1778 Target Full Sequence	0.0	Arabidopsis thaliana helicase with zinc finger protein mRNA	helicase with zinc finger protein(AT2G46420)	coding protein	psRNATarget
NM_130206.3	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||||||||||||||||| targets:1239   UCAUCCCCAUCUUGAUCCUA   1258 Target Full Sequence	0.0	Arabidopsis thaliana helicase with zinc finger protein mRNA	helicase with zinc finger protein(AT2G46420)	coding protein	psRNATarget
NM_001125064.1	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||||||||||||||||| targets:1023   UCAUCCCCAUCUUGAUCCUA   1042 Target Full Sequence	0.0	Arabidopsis thaliana helicase with zinc finger protein mRNA	helicase with zinc finger protein(AT2G46420)	coding protein	psRNATarget
AY052357.1	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||||||||||||||||| targets:1023   UCAUCCCCAUCUUGAUCCUA   1042 Target Full Sequence	0.0	Arabidopsis thaliana At2g46420/F11C10.11 mRNA, complete cds	NA	coding protein	psRNATarget
BX819286.1	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||||||||||||||||| targets:1012   UCAUCCCCAUCUUGAUCCUA   1031 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB64ZC04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT002631.1	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||||||||||||||||| targets:513   UCAUCCCCAUCUUGAUCCUA   532 Target Full Sequence	0.0	Arabidopsis thaliana At2g46420/F11C10.11 gene, complete cds	NA	coding protein	psRNATarget
NM_118249.8	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||=*||||||||||||| targets:321   UCAUCUGCAUCUUGAUCCUA   340 Target Full Sequence	2.0	Arabidopsis thaliana transmembrane protein, putative (DUF1218) mRNA	transmembrane protein, putative (DUF1218)(AT4G21310)	coding protein	psRNATarget
BX828842.1	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||=*||||||||||||| targets:306   UCAUCUGCAUCUUGAUCCUA   325 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL43ZE03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001341477.1	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||=*||||||||||||| targets:321   UCAUCUGCAUCUUGAUCCUA   340 Target Full Sequence	2.0	Arabidopsis thaliana transmembrane protein, putative (DUF1218) partial mRNA	transmembrane protein, putative (DUF1218)(AT4G21310)	coding protein	psRNATarget
BX829111.1	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||=*||||||||||||| targets:24   UCAUCUGCAUCUUGAUCCUA   43 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL70ZH06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX829217.1	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||=*||||||||||||| targets:24   UCAUCUGCAUCUUGAUCCUA   43 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL81ZF02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT014771.1	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||=*||||||||||||| targets:23   UCAUCUGCAUCUUGAUCCUA   42 Target Full Sequence	2.0	Arabidopsis thaliana At4g21310 gene, complete cds	NA	coding protein	psRNATarget
BT015009.1	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||=*||||||||||||| targets:23   UCAUCUGCAUCUUGAUCCUA   42 Target Full Sequence	2.0	Arabidopsis thaliana At4g21310 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001344942.1	ncRNA:20   AGUAGGGGUAGAACUAGGAU   1   |||||*=||||||||||||* targets:77   UCAUCAUCAUCUUGAUCCUC   96 Target Full Sequence	3.0	Arabidopsis thaliana transmembrane protein partial mRNA	transmembrane protein(AT5G51585)	coding protein	psRNATarget